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Zinc in PDB 1vyk: Crystal Structure of Psbq Protein of Photosystem II From Higher Plants

Protein crystallography data

The structure of Crystal Structure of Psbq Protein of Photosystem II From Higher Plants, PDB code: 1vyk was solved by J.A.Hermoso, M.Balsera, J.De Las Rivas, J.B.Arellano, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 14.43 / 1.49
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 49.938, 49.938, 96.972, 90.00, 90.00, 120.00
R / Rfree (%) 16.3 / 20

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Psbq Protein of Photosystem II From Higher Plants (pdb code 1vyk). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of Psbq Protein of Photosystem II From Higher Plants, PDB code: 1vyk:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 1vyk

Go back to Zinc Binding Sites List in 1vyk
Zinc binding site 1 out of 2 in the Crystal Structure of Psbq Protein of Photosystem II From Higher Plants


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Psbq Protein of Photosystem II From Higher Plants within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1150

b:28.1
occ:1.00
OD2 A:ASP67 1.9 26.5 1.0
OE2 A:GLU131 2.0 23.7 1.0
NZ A:LYS63 2.0 24.6 1.0
O A:HOH2263 2.0 32.9 1.0
CD A:GLU131 2.8 24.9 1.0
CG A:ASP67 2.9 27.2 1.0
OE1 A:GLU131 3.0 25.5 1.0
CE A:LYS63 3.0 24.6 1.0
OD1 A:ASP67 3.2 29.7 1.0
CD A:LYS63 3.5 24.1 1.0
O A:HOH2136 4.0 34.9 1.0
O A:HOH2237 4.0 30.8 1.0
CG A:GLU131 4.2 22.8 1.0
CB A:ASP67 4.3 26.8 1.0
CG A:LYS63 4.3 25.2 1.0
O A:HOH2084 4.3 48.2 1.0
CG2 A:ILE66 4.5 23.8 1.0
CA A:ASP67 4.6 27.0 1.0
N A:ASP67 4.7 26.1 1.0
O A:LYS63 5.0 25.1 1.0

Zinc binding site 2 out of 2 in 1vyk

Go back to Zinc Binding Sites List in 1vyk
Zinc binding site 2 out of 2 in the Crystal Structure of Psbq Protein of Photosystem II From Higher Plants


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Psbq Protein of Photosystem II From Higher Plants within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1151

b:23.2
occ:1.00
O A:ACT1152 1.9 26.7 1.0
OE1 A:GLU129 1.9 24.0 1.0
NE2 A:HIS120 2.0 20.7 1.0
OXT A:ACT1152 2.6 26.6 1.0
C A:ACT1152 2.6 26.8 1.0
CD A:GLU129 2.7 24.3 1.0
OE2 A:GLU129 2.9 27.2 1.0
CE1 A:HIS120 3.0 20.4 1.0
CD2 A:HIS120 3.0 19.9 1.0
CD1 A:ILE124 3.9 24.7 1.0
CH3 A:ACT1152 4.1 27.4 1.0
ND1 A:HIS120 4.1 18.9 1.0
CG A:HIS120 4.2 18.6 1.0
CG A:GLU129 4.2 22.9 1.0
O A:HOH2264 4.3 43.2 1.0
CB A:GLU129 4.7 21.8 1.0
CE2 A:TYR133 5.0 21.2 1.0

Reference:

M.Balsera, J.B.Arellano, J.L.Revuelta, J.De Las Rivas, J.A.Hermoso. The 1.49 A Resolution Crystal Structure of Psbq From Photosystem II of Spinacia Oleracea Reveals A Ppii Structure in the N-Terminal Region. J.Mol.Biol. V. 350 1051 2005.
ISSN: ISSN 0022-2836
PubMed: 15982665
DOI: 10.1016/J.JMB.2005.05.044
Page generated: Mon Jan 25 16:15:16 2021

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