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Zinc in PDB 1vhe: Crystal Structure of A Aminopeptidase/Glucanase Homolog

Protein crystallography data

The structure of Crystal Structure of A Aminopeptidase/Glucanase Homolog, PDB code: 1vhe was solved by Structural Genomix, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.72 / 1.90
Space group F 4 3 2
Cell size a, b, c (Å), α, β, γ (°) 223.966, 223.966, 223.966, 90.00, 90.00, 90.00
R / Rfree (%) 17.6 / 19.3

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of A Aminopeptidase/Glucanase Homolog (pdb code 1vhe). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of A Aminopeptidase/Glucanase Homolog, PDB code: 1vhe:

Zinc binding site 1 out of 1 in 1vhe

Go back to Zinc Binding Sites List in 1vhe
Zinc binding site 1 out of 1 in the Crystal Structure of A Aminopeptidase/Glucanase Homolog


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of A Aminopeptidase/Glucanase Homolog within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn372

b:29.7
occ:1.00
OD1 A:ASP182 2.1 4.4 1.0
O A:HOH373 2.1 7.9 1.0
O A:HOH374 2.2 6.8 1.0
OD2 A:ASP237 2.2 5.6 1.0
OD1 A:ASP237 2.3 3.9 1.0
NE2 A:HIS68 2.4 4.8 1.0
CG A:ASP237 2.5 4.4 1.0
CG A:ASP182 3.0 7.2 1.0
CE1 A:HIS68 3.3 6.2 1.0
CD2 A:HIS68 3.4 5.2 1.0
OD2 A:ASP182 3.4 5.8 1.0
CB A:ASN183 3.9 4.2 1.0
O A:HOH424 4.0 7.5 1.0
OE1 A:GLU214 4.0 6.3 1.0
CB A:ASP237 4.0 4.9 1.0
OE2 A:GLU215 4.1 7.4 1.0
O A:HOH422 4.2 14.4 1.0
CD A:GLU214 4.2 8.0 1.0
OE2 A:GLU214 4.3 8.2 1.0
CB A:ASP182 4.4 5.0 1.0
CG A:ASN183 4.4 5.0 1.0
CG2 A:VAL238 4.4 9.1 1.0
ND1 A:HIS68 4.4 4.3 1.0
CG A:HIS68 4.5 5.2 1.0
O A:HOH589 4.6 27.7 1.0
ND2 A:ASN183 4.6 3.8 1.0
N A:VAL238 4.6 7.5 1.0
CA A:ASP182 4.7 5.4 1.0
O A:HOH421 4.7 6.7 1.0
CD A:GLU215 4.8 7.0 1.0
O A:HOH513 4.8 19.8 1.0
CA A:ASN183 4.9 3.6 1.0
C A:ASP182 4.9 5.0 1.0
CA A:ASP237 4.9 4.5 1.0
N A:ASN183 5.0 5.1 1.0

Reference:

J.Badger, J.M.Sauder, J.M.Adams, S.Antonysamy, K.Bain, M.G.Bergseid, S.G.Buchanan, M.D.Buchanan, Y.Batiyenko, J.A.Christopher, S.Emtage, A.Eroshkina, I.Feil, E.B.Furlong, K.S.Gajiwala, X.Gao, D.He, J.Hendle, A.Huber, K.Hoda, P.Kearins, C.Kissinger, B.Laubert, H.A.Lewis, J.Lin, K.Loomis, D.Lorimer, G.Louie, M.Maletic, C.D.Marsh, I.Miller, J.Molinari, H.J.Muller-Dieckmann, J.M.Newman, B.W.Noland, B.Pagarigan, F.Park, T.S.Peat, K.W.Post, S.Radojicic, A.Ramos, R.Romero, M.E.Rutter, W.E.Sanderson, K.D.Schwinn, J.Tresser, J.Winhoven, T.A.Wright, L.Wu, J.Xu, T.J.Harris. Structural Analysis of A Set of Proteins Resulting From A Bacterial Genomics Project Proteins V. 60 787 2005.
ISSN: ISSN 0887-3585
PubMed: 16021622
DOI: 10.1002/PROT.20541
Page generated: Wed Dec 16 03:08:06 2020

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