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Zinc in PDB 1vd4: Solution Structure of the Zinc Finger Domain of Tfiie Alpha

Zinc Binding Sites:

The binding sites of Zinc atom in the Solution Structure of the Zinc Finger Domain of Tfiie Alpha (pdb code 1vd4). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Solution Structure of the Zinc Finger Domain of Tfiie Alpha, PDB code: 1vd4:

Zinc binding site 1 out of 1 in 1vd4

Go back to Zinc Binding Sites List in 1vd4
Zinc binding site 1 out of 1 in the Solution Structure of the Zinc Finger Domain of Tfiie Alpha


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of the Zinc Finger Domain of Tfiie Alpha within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn175

b:0.0
occ:1.00
SG A:CYS154 2.0 0.0 1.0
SG A:CYS157 2.1 0.0 1.0
SG A:CYS129 2.5 0.0 1.0
HB A:THR159 2.5 0.0 1.0
HB2 A:CYS154 2.8 0.0 1.0
SG A:CYS132 2.8 0.0 1.0
CB A:CYS154 2.9 0.0 1.0
H A:THR159 2.9 0.0 1.0
H A:CYS132 3.1 0.0 1.0
HB3 A:CYS157 3.1 0.0 1.0
HD1 A:PHE156 3.2 0.0 1.0
H A:CYS157 3.2 0.0 1.0
HB3 A:CYS154 3.2 0.0 1.0
CB A:CYS157 3.2 0.0 1.0
HE1 A:PHE156 3.4 0.0 1.0
HB3 A:CYS132 3.5 0.0 1.0
CB A:THR159 3.5 0.0 1.0
CB A:CYS129 3.6 0.0 1.0
HB A:VAL131 3.6 0.0 1.0
HB2 A:CYS129 3.6 0.0 1.0
N A:THR159 3.8 0.0 1.0
CB A:CYS132 3.8 0.0 1.0
HB3 A:CYS129 3.8 0.0 1.0
N A:CYS157 3.8 0.0 1.0
CA A:CYS157 3.8 0.0 1.0
HB2 A:SER134 3.9 0.0 1.0
C A:CYS157 3.9 0.0 1.0
CD1 A:PHE156 3.9 0.0 1.0
OG1 A:THR159 4.0 0.0 1.0
CE1 A:PHE156 4.0 0.0 1.0
N A:CYS132 4.0 0.0 1.0
HB2 A:CYS157 4.1 0.0 1.0
O A:CYS157 4.2 0.0 1.0
CA A:CYS154 4.3 0.0 1.0
CA A:THR159 4.3 0.0 1.0
N A:HIS158 4.3 0.0 1.0
H A:PHE156 4.4 0.0 1.0
HG21 A:THR159 4.4 0.0 1.0
HA A:CYS154 4.4 0.0 1.0
H A:HIS158 4.4 0.0 1.0
HZ A:PHE136 4.4 0.0 1.0
HG13 A:VAL131 4.5 0.0 1.0
O A:THR159 4.5 0.0 1.0
H A:SER134 4.5 0.0 1.0
H A:VAL131 4.5 0.0 1.0
HG1 A:THR159 4.5 0.0 1.0
CG2 A:THR159 4.5 0.0 1.0
CA A:CYS132 4.5 0.0 1.0
H A:THR155 4.6 0.0 1.0
CB A:VAL131 4.6 0.0 1.0
HG11 A:VAL131 4.6 0.0 1.0
HB2 A:CYS132 4.6 0.0 1.0
HG13 A:VAL161 4.7 0.0 1.0
HG23 A:THR159 4.8 0.0 1.0
C A:THR159 4.8 0.0 1.0
CG1 A:VAL131 4.8 0.0 1.0
HE2 A:PHE136 4.8 0.0 1.0
C A:HIS158 4.8 0.0 1.0
CB A:SER134 4.8 0.0 1.0
HA A:CYS157 4.9 0.0 1.0
H A:CYS154 4.9 0.0 1.0
CA A:CYS129 4.9 0.0 1.0
OG A:SER134 5.0 0.0 1.0
HD2 A:PRO130 5.0 0.0 1.0

Reference:

M.Okuda, A.Tanaka, Y.Arai, M.Satoh, H.Okamura, A.Nagadoi, F.Hanaoka, Y.Ohkuma, Y.Nishimura. A Novel Zinc Finger Structure in the Large Subunit of Human General Transcription Factor Tfiie. J.Biol.Chem. V. 279 51395 2004.
ISSN: ISSN 0021-9258
PubMed: 15385556
DOI: 10.1074/JBC.M404722200
Page generated: Mon Jan 25 16:15:11 2021

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