Zinc in PDB 1va1: Solution Structure of Transcription Factor SP1 Dna Binding Domain (Zinc Finger 1)

The binding sites of Zinc atom in the Solution Structure of Transcription Factor SP1 Dna Binding Domain (Zinc Finger 1) (pdb code 1va1). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Solution Structure of Transcription Factor SP1 Dna Binding Domain (Zinc Finger 1), PDB code: 1va1:

Zinc binding site 1 out of 1 in the Solution Structure of Transcription Factor SP1 Dna Binding Domain (Zinc Finger 1)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of Transcription Factor SP1 Dna Binding Domain (Zinc Finger 1) within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn100 b:0.0 occ:1.00 NE2 A:HIS557 2.0 0.0 1.0 NE2 A:HIS561 2.0 0.0 1.0 SG A:CYS539 2.3 0.0 1.0 SG A:CYS544 2.3 0.0 1.0 HE1 A:HIS557 2.4 0.0 1.0 HB2 A:CYS544 2.5 0.0 1.0 CE1 A:HIS557 2.5 0.0 1.0 CB A:CYS544 2.7 0.0 1.0 HB3 A:CYS544 2.8 0.0 1.0 CE1 A:HIS561 2.9 0.0 1.0 HE1 A:HIS561 3.0 0.0 1.0 CD2 A:HIS561 3.2 0.0 1.0 CD2 A:HIS557 3.3 0.0 1.0 HD3 A:LYS546 3.4 0.0 1.0 HB2 A:CYS539 3.5 0.0 1.0 HD2 A:HIS561 3.5 0.0 1.0 CB A:CYS539 3.5 0.0 1.0 HD2 A:LYS546 3.5 0.0 1.0 ND1 A:HIS557 3.8 0.0 1.0 HB3 A:CYS539 3.8 0.0 1.0 HD2 A:HIS557 3.9 0.0 1.0 CD A:LYS546 3.9 0.0 1.0 ND1 A:HIS561 4.1 0.0 1.0 HG2 A:LYS546 4.2 0.0 1.0 CG A:HIS557 4.2 0.0 1.0 CA A:CYS544 4.2 0.0 1.0 CG A:HIS561 4.2 0.0 1.0 H A:GLY545 4.4 0.0 1.0 HD13 A:ILE541 4.5 0.0 1.0 HD1 A:HIS557 4.5 0.0 1.0 HA A:CYS544 4.6 0.0 1.0 HZ1 A:LYS546 4.6 0.0 1.0 CG A:LYS546 4.7 0.0 1.0 H A:CYS544 4.7 0.0 1.0 H A:LYS546 4.7 0.0 1.0 CA A:CYS539 4.9 0.0 1.0 N A:CYS544 4.9 0.0 1.0 HA A:CYS539 4.9 0.0 1.0 HD1 A:HIS561 4.9 0.0 1.0 HE2 A:TYR548 5.0 0.0 1.0

S.Oka, Y.Shiraishi, T.Yoshida, T.Ohkubo, Y.Sugiura, Y.Kobayashi. uc(Nmr) Structure of Transcription Factor SP1 Dna Binding Domain Biochemistry V. 43 16027 2004.
ISSN: ISSN 0006-2960
PubMed: 15609997
DOI: 10.1021/BI048438P