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Zinc in PDB 1v9x: Solution Structure of the First Zn-Finger Domain of Poly(Adp-Ribose) Polymerase-1

Enzymatic activity of Solution Structure of the First Zn-Finger Domain of Poly(Adp-Ribose) Polymerase-1

All present enzymatic activity of Solution Structure of the First Zn-Finger Domain of Poly(Adp-Ribose) Polymerase-1:
2.4.2.30;

Zinc Binding Sites:

The binding sites of Zinc atom in the Solution Structure of the First Zn-Finger Domain of Poly(Adp-Ribose) Polymerase-1 (pdb code 1v9x). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Solution Structure of the First Zn-Finger Domain of Poly(Adp-Ribose) Polymerase-1, PDB code: 1v9x:

Zinc binding site 1 out of 1 in 1v9x

Go back to Zinc Binding Sites List in 1v9x
Zinc binding site 1 out of 1 in the Solution Structure of the First Zn-Finger Domain of Poly(Adp-Ribose) Polymerase-1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of the First Zn-Finger Domain of Poly(Adp-Ribose) Polymerase-1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn200

b:0.0
occ:1.00
ND1 A:HIS55 2.0 0.0 1.0
SG A:CYS23 2.3 0.0 1.0
SG A:CYS26 2.3 0.0 1.0
SG A:CYS58 2.3 0.0 1.0
HB2 A:CYS23 2.8 0.0 1.0
HB3 A:CYS23 2.8 0.0 1.0
CB A:CYS23 2.8 0.0 1.0
HB2 A:HIS55 2.9 0.0 1.0
H A:HIS55 2.9 0.0 1.0
CE1 A:HIS55 3.0 0.0 1.0
CG A:HIS55 3.1 0.0 1.0
H A:CYS26 3.1 0.0 1.0
HB3 A:CYS26 3.1 0.0 1.0
HE1 A:HIS55 3.2 0.0 1.0
CB A:CYS26 3.4 0.0 1.0
HB2 A:CYS58 3.4 0.0 1.0
CB A:HIS55 3.5 0.0 1.0
CB A:CYS58 3.5 0.0 1.0
HB3 A:CYS58 3.8 0.0 1.0
HB A:THR25 3.8 0.0 1.0
N A:HIS55 3.8 0.0 1.0
N A:CYS26 3.8 0.0 1.0
NE2 A:HIS55 4.1 0.0 1.0
CD2 A:HIS55 4.2 0.0 1.0
CA A:CYS26 4.2 0.0 1.0
H A:SER28 4.2 0.0 1.0
HB2 A:SER28 4.2 0.0 1.0
HB2 A:CYS26 4.2 0.0 1.0
CA A:HIS55 4.3 0.0 1.0
HA A:ASN54 4.3 0.0 1.0
H A:LYS27 4.3 0.0 1.0
HB3 A:HIS55 4.3 0.0 1.0
CA A:CYS23 4.4 0.0 1.0
H A:THR25 4.5 0.0 1.0
HG22 A:THR25 4.7 0.0 1.0
HA A:CYS23 4.8 0.0 1.0
HB3 A:ASN54 4.8 0.0 1.0
CB A:THR25 4.8 0.0 1.0
HZ2 A:LYS61 4.8 0.0 1.0
N A:LYS27 4.8 0.0 1.0
CA A:CYS58 4.9 0.0 1.0
C A:CYS26 4.9 0.0 1.0
C A:ASN54 4.9 0.0 1.0
H A:LYS24 4.9 0.0 1.0
H A:CYS58 4.9 0.0 1.0
C A:THR25 4.9 0.0 1.0
H A:CYS23 5.0 0.0 1.0
HA A:HIS55 5.0 0.0 1.0

Reference:

T.Nagashima, F.Hayashi, S.Yokoyama. Solution Structure of the First Zn-Finger Domain of Poly(Adp-Ribose) Polymerase-1 To Be Published.
Page generated: Mon Jan 25 16:15:11 2021

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