Zinc in PDB 1v8d: Crystal Structure of the Conserved Hypothetical Protein TT1679 From Thermus Thermophilus

The structure of Crystal Structure of the Conserved Hypothetical Protein TT1679 From Thermus Thermophilus, PDB code: 1v8d was solved by S.Kishishita, T.Terada, M.Shirouzu, S.Kuramitsu, S.Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	34.55 / 2.16
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	102.799, 115.224, 75.270, 90.00, 129.76, 90.00
R / Rfree (%)	18.9 / 24.9

The binding sites of Zinc atom in the Crystal Structure of the Conserved Hypothetical Protein TT1679 From Thermus Thermophilus (pdb code 1v8d). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of the Conserved Hypothetical Protein TT1679 From Thermus Thermophilus, PDB code: 1v8d:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of the Conserved Hypothetical Protein TT1679 From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the Conserved Hypothetical Protein TT1679 From Thermus Thermophilus within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn401 b:35.3 occ:1.00 OE1 A:GLU94 1.9 20.9 1.0 O A:HOH1462 2.5 25.9 1.0 O A:HOH1477 2.5 24.6 1.0 CD A:GLU94 2.6 21.0 1.0 OE2 A:GLU94 2.6 18.9 1.0 CG A:GLU94 4.0 21.7 1.0 CG A:PRO98 4.4 28.2 1.0 O A:HOH1514 4.5 13.2 1.0 O A:HOH1450 4.6 20.8 1.0 NH1 A:ARG153 4.6 48.1 1.0 CB A:GLU94 4.6 24.1 1.0 CA A:GLU94 4.8 24.1 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of the Conserved Hypothetical Protein TT1679 From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of the Conserved Hypothetical Protein TT1679 From Thermus Thermophilus within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1402 b:40.6 occ:1.00 O A:HOH1463 2.3 17.7 1.0 NE2 A:HIS90 2.3 22.5 1.0 O A:HOH1495 2.4 23.8 1.0 CD2 A:HIS90 3.1 24.6 1.0 CE1 A:HIS90 3.5 24.5 1.0 NH1 A:ARG44 3.9 31.6 1.0 CG A:GLU94 4.1 21.7 1.0 CG A:HIS90 4.3 28.0 1.0 O A:HOH1509 4.4 9.9 1.0 ND1 A:HIS90 4.5 28.7 1.0 O A:HOH1449 4.5 15.6 1.0 CD A:GLU94 4.8 21.0 1.0 CB A:GLU94 5.0 24.1 1.0 CZ A:ARG44 5.0 30.4 1.0

S.Kishishita, T.Terada, M.Shirouzu, S.Kuramitsu, S.Yokoyama. Crystal Structure of the Conserved Hypothetical Protein TT1679 From Thermus Thermophilus HB8 To Be Published.