Atomistry » Zinc » PDB 1v0d-1vdd » 1v67
Atomistry »
  Zinc »
    PDB 1v0d-1vdd »
      1v67 »

Zinc in PDB 1v67: Structure of Ferripyochelin Binding Protein From Pyrococcus Horikoshii OT3

Enzymatic activity of Structure of Ferripyochelin Binding Protein From Pyrococcus Horikoshii OT3

All present enzymatic activity of Structure of Ferripyochelin Binding Protein From Pyrococcus Horikoshii OT3:
4.2.1.1;

Protein crystallography data

The structure of Structure of Ferripyochelin Binding Protein From Pyrococcus Horikoshii OT3, PDB code: 1v67 was solved by J.Jeyakanthan, T.H.Tahirov, Riken Structural Genomics/Proteomicsinitiative (Rsgi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.81 / 2.30
Space group F 41 3 2
Cell size a, b, c (Å), α, β, γ (°) 158.511, 158.511, 158.511, 90.00, 90.00, 90.00
R / Rfree (%) 18.9 / 23.8

Other elements in 1v67:

The structure of Structure of Ferripyochelin Binding Protein From Pyrococcus Horikoshii OT3 also contains other interesting chemical elements:

Calcium (Ca) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of Ferripyochelin Binding Protein From Pyrococcus Horikoshii OT3 (pdb code 1v67). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Structure of Ferripyochelin Binding Protein From Pyrococcus Horikoshii OT3, PDB code: 1v67:

Zinc binding site 1 out of 1 in 1v67

Go back to Zinc Binding Sites List in 1v67
Zinc binding site 1 out of 1 in the Structure of Ferripyochelin Binding Protein From Pyrococcus Horikoshii OT3


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of Ferripyochelin Binding Protein From Pyrococcus Horikoshii OT3 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn3001

b:53.2
occ:1.00
 NE2 A:HIS87 2.2 28.0 1.0
ND1 A:HIS65 2.4 24.4 1.0
O A:HOH3046 2.7 23.1 1.0
CE1 A:HIS65 2.9 23.2 1.0
O3 A:BCT1001 3.0 46.7 1.0
CE1 A:HIS87 3.2 20.8 1.0
CD2 A:HIS87 3.2 21.8 1.0
C A:BCT1001 3.2 53.6 1.0
O1 A:BCT1001 3.4 35.4 1.0
CG A:HIS65 3.7 27.9 1.0
O2 A:BCT1001 3.9 50.5 1.0
NE2 A:HIS65 4.2 22.9 1.0
CB A:HIS65 4.3 17.5 1.0
ND1 A:HIS87 4.3 26.8 1.0
CG A:HIS87 4.3 22.2 1.0
O A:THR66 4.4 30.1 1.0
CD2 A:HIS65 4.6 24.1 1.0
NH2 A:ARG44 4.8 23.8 1.0

Reference:

J.Jeyakanthan, S.Rangarajan, P.Mridula, S.P.Kanaujia, Y.Shiro, S.Kuramitsu, S.Yokoyama, K.Sekar. Observation of A Calcium-Binding Site in the Gamma-Class Carbonic Anhydrase From Pyrococcus Horikoshii. Acta Crystallogr.,Sect.D V. 64 1012 2008.
ISSN: ISSN 0907-4449
PubMed: 18931408
DOI: 10.1107/S0907444908024323
Page generated: Wed Oct 16 19:44:15 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy