Zinc in PDB 1uxe: Adenovirus AD37 Fibre Head

The structure of Adenovirus AD37 Fibre Head, PDB code: 1uxe was solved by W.P.Burmeister, D.Guilligay, S.Cusack, G.Wadell, N.Arnberg, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	51.30 / 2.0
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	62.490, 70.360, 75.280, 90.00, 94.12, 90.00
R / Rfree (%)	20.4 / 24.1

The binding sites of Zinc atom in the Adenovirus AD37 Fibre Head (pdb code 1uxe). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the Adenovirus AD37 Fibre Head, PDB code: 1uxe:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in the Adenovirus AD37 Fibre Head


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Adenovirus AD37 Fibre Head within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1366 b:33.3 occ:1.00 OE2 A:GLU351 2.0 30.5 1.0 NE2 A:HIS231 2.0 25.8 1.0 O A:ACT1367 2.2 50.2 1.0 O A:HOH2115 2.4 31.1 1.0 O A:HOH2114 2.4 25.7 1.0 CE1 A:HIS231 3.0 24.9 1.0 CD A:GLU351 3.0 29.2 1.0 CD2 A:HIS231 3.1 24.3 1.0 C A:ACT1367 3.2 50.3 1.0 CG A:GLU351 3.4 23.5 1.0 OXT A:ACT1367 3.6 48.0 1.0 ND1 A:HIS231 4.1 24.6 1.0 OE1 A:GLU351 4.2 25.3 1.0 CG A:HIS231 4.2 24.5 1.0 O A:VAL225 4.2 23.1 1.0 O B:HOH2053 4.4 51.1 1.0 CH3 A:ACT1367 4.5 47.5 1.0 CE B:LYS300 4.5 42.7 1.0 CA A:VAL226 4.6 27.6 1.0 O A:VAL226 4.7 31.0 1.0 CB A:GLU351 4.8 21.8 1.0 NZ B:LYS300 4.8 42.1 1.0 C A:VAL226 5.0 27.1 1.0

Zinc binding site 2 out of 3 in the Adenovirus AD37 Fibre Head


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Adenovirus AD37 Fibre Head within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn1366 b:31.5 occ:1.00 OE2 B:GLU351 1.8 28.2 1.0 NE2 B:HIS231 2.0 23.8 1.0 O B:HOH2119 2.2 31.0 1.0 O B:HOH2120 2.5 40.2 1.0 CD B:GLU351 2.8 30.4 1.0 CE1 B:HIS231 3.0 21.3 1.0 CD2 B:HIS231 3.0 21.2 1.0 OE1 B:GLU351 3.6 27.5 1.0 O C:HOH2089 3.7 46.6 1.0 CG B:GLU351 3.7 24.4 1.0 O B:HOH2107 4.0 35.0 1.0 ND1 B:HIS231 4.1 21.1 1.0 CG B:HIS231 4.2 22.2 1.0 O B:VAL225 4.3 21.0 1.0 CE C:LYS300 4.4 35.3 1.0 O B:VAL226 4.5 26.7 1.0 NZ C:LYS300 4.6 34.5 1.0 CA B:VAL226 4.7 24.3 1.0 O C:HOH2083 4.8 22.1 1.0 C B:VAL226 4.9 24.4 1.0

Zinc binding site 3 out of 3 in the Adenovirus AD37 Fibre Head


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Adenovirus AD37 Fibre Head within 5.0Å range: probe atom residue distance (Å) B Occ C:Zn1366 b:31.4 occ:1.00 O C:ACT1367 1.6 17.8 1.0 C C:ACT1367 2.1 26.3 1.0 OXT C:ACT1367 2.2 28.8 1.0 NE2 C:HIS231 2.3 19.8 1.0 CE1 C:HIS231 3.2 20.0 1.0 CD2 C:HIS231 3.4 15.4 1.0 CH3 C:ACT1367 3.5 28.1 1.0 ND1 C:HIS231 4.4 16.8 1.0 OE2 C:GLU351 4.4 30.4 1.0 CG C:HIS231 4.5 18.1 1.0 CD1 C:ILE232 4.5 23.8 1.0 CG1 C:ILE232 4.8 20.1 1.0 CD C:GLU351 5.0 30.9 1.0

W.P.Burmeister, D.Guilligay, S.Cusack, G.Wadell, N.Arnberg. Crystal Structure of Species D Adenovirus Fiber Knobs and Their Sialic Acid Binding Sites J.Virol. V. 78 7727 2004.
ISSN: ISSN 0022-538X
PubMed: 15220447
DOI: 10.1128/JVI.78.14.7727-7736.2004