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Zinc in PDB 1ur6: uc(Nmr) Based Structural Model of the UBCH5B-CNOT4 Complex

Enzymatic activity of uc(Nmr) Based Structural Model of the UBCH5B-CNOT4 Complex

All present enzymatic activity of uc(Nmr) Based Structural Model of the UBCH5B-CNOT4 Complex:
6.3.2.19;

Zinc Binding Sites:

The binding sites of Zinc atom in the uc(Nmr) Based Structural Model of the UBCH5B-CNOT4 Complex (pdb code 1ur6). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the uc(Nmr) Based Structural Model of the UBCH5B-CNOT4 Complex, PDB code: 1ur6:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 1ur6

Go back to Zinc Binding Sites List in 1ur6
Zinc binding site 1 out of 2 in the uc(Nmr) Based Structural Model of the UBCH5B-CNOT4 Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of uc(Nmr) Based Structural Model of the UBCH5B-CNOT4 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn79

b:1.1
occ:1.00
SG B:CYS38 2.4 1.2 1.0
SG B:CYS41 2.4 0.7 1.0
SG B:CYS17 2.5 1.3 1.0
SG B:CYS14 2.5 1.4 1.0
HG B:CYS17 2.8 2.3 1.0
HG B:CYS38 2.9 1.9 1.0
HG B:CYS14 3.0 2.2 1.0
HB2 B:GLU19 3.0 1.6 1.0
HG B:CYS41 3.2 1.1 1.0
O B:PHE40 3.8 1.4 1.0
HB2 B:PHE40 3.9 1.4 1.0
CB B:CYS41 3.9 0.6 1.0
CB B:GLU19 4.0 1.4 1.0
HB2 B:CYS41 4.0 0.7 1.0
CB B:CYS38 4.0 0.9 1.0
HD22 B:LEU21 4.1 1.8 1.0
HB3 B:GLU19 4.1 1.8 1.0
O B:GLU19 4.1 1.4 1.0
CB B:CYS14 4.1 1.0 1.0
CB B:CYS17 4.1 1.1 1.0
O B:PRO20 4.2 1.6 1.0
HB3 B:CYS38 4.2 0.9 1.0
H B:GLU19 4.2 1.4 1.0
O A:MET1 4.2 2.5 1.0
HB3 B:CYS17 4.3 1.2 1.0
C B:PHE40 4.3 0.9 1.0
HB3 B:CYS14 4.4 1.2 1.0
HB2 B:CYS14 4.4 1.7 1.0
HB2 B:CYS38 4.4 1.2 1.0
C B:GLU19 4.6 1.5 1.0
H B:CYS38 4.6 1.2 1.0
H B:CYS14 4.7 1.3 1.0
HG3 B:GLU19 4.7 1.7 1.0
HB3 B:CYS41 4.7 0.7 1.0
HB2 B:CYS17 4.7 1.3 1.0
N B:CYS41 4.7 0.7 1.0
H B:CYS17 4.7 1.0 1.0
CA B:GLU19 4.7 1.5 1.0
HA B:CYS41 4.7 0.7 1.0
CA B:CYS41 4.7 0.6 1.0
CB B:PHE40 4.8 0.9 1.0
N B:GLU19 4.9 1.4 1.0
HB3 B:PHE40 4.9 1.1 1.0
HD23 B:LEU21 5.0 2.1 1.0
HB3 B:LEU16 5.0 1.9 1.0
CG B:GLU19 5.0 1.6 1.0

Zinc binding site 2 out of 2 in 1ur6

Go back to Zinc Binding Sites List in 1ur6
Zinc binding site 2 out of 2 in the uc(Nmr) Based Structural Model of the UBCH5B-CNOT4 Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of uc(Nmr) Based Structural Model of the UBCH5B-CNOT4 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn80

b:1.0
occ:1.00
SG B:CYS31 2.4 0.8 1.0
SG B:CYS56 2.4 1.0 1.0
SG B:CYS33 2.5 1.0 1.0
SG B:CYS53 2.5 0.9 1.0
HG B:CYS33 3.2 1.6 1.0
HB3 B:CYS33 3.4 1.1 1.0
HG B:CYS31 3.4 0.9 1.0
HB2 B:CYS56 3.4 2.2 1.0
HB2 B:CYS53 3.4 1.4 1.0
CB B:CYS53 3.5 0.8 1.0
CB B:CYS56 3.5 1.4 1.0
HG B:CYS56 3.5 1.9 1.0
HB3 B:CYS53 3.5 1.0 1.0
CB B:CYS33 3.6 1.1 1.0
HB3 B:CYS31 3.7 0.8 1.0
CB B:CYS31 3.7 0.7 1.0
HG B:CYS53 3.7 1.6 1.0
HB3 B:CYS56 3.7 2.0 1.0
HB2 B:CYS31 4.0 0.7 1.0
HE1 B:TYR60 4.1 1.0 1.0
HB2 B:CYS33 4.2 1.2 1.0
H B:CYS33 4.3 1.2 1.0
HB2 B:LYS58 4.5 1.1 1.0
N B:CYS33 4.8 1.0 1.0
CA B:CYS33 4.8 1.1 1.0
CA B:CYS56 4.9 1.2 1.0
CA B:CYS53 4.9 0.6 1.0
CA B:CYS31 5.0 0.7 1.0

Reference:

C.Dominguez, A.M.J.J.Bonvin, G.S.Winkler, F.M.A.Van Schaik, H.Th.M.Timmers, R.Boelens. Structural Model of the UBCH5B/CNOT4 Complex Revealed By Combining uc(Nmr), Mutagenesis, and Docking Approaches Structure V. 12 633 2004.
ISSN: ISSN 0969-2126
PubMed: 15062086
DOI: 10.1016/J.STR.2004.03.004
Page generated: Mon Jan 25 16:14:44 2021

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