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Zinc in PDB 1ul5: Solution Structure of the Dna-Binding Domain of Squamosa Promoter Binding Protein-Like 7

Zinc Binding Sites:

The binding sites of Zinc atom in the Solution Structure of the Dna-Binding Domain of Squamosa Promoter Binding Protein-Like 7 (pdb code 1ul5). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Solution Structure of the Dna-Binding Domain of Squamosa Promoter Binding Protein-Like 7, PDB code: 1ul5:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 1ul5

Go back to Zinc Binding Sites List in 1ul5
Zinc binding site 1 out of 2 in the Solution Structure of the Dna-Binding Domain of Squamosa Promoter Binding Protein-Like 7


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of the Dna-Binding Domain of Squamosa Promoter Binding Protein-Like 7 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn221

b:0.0
occ:1.00
SG A:CYS163 2.5 0.0 1.0
SG A:CYS138 2.5 0.0 1.0
SG A:CYS143 2.5 0.0 1.0
SG A:CYS160 2.5 0.0 1.0
H A:CYS160 3.1 0.0 1.0
HB3 A:CYS143 3.2 0.0 1.0
HB2 A:CYS163 3.2 0.0 1.0
HB3 A:ALA145 3.3 0.0 1.0
HG21 A:VAL140 3.4 0.0 1.0
CB A:CYS163 3.5 0.0 1.0
CB A:CYS143 3.5 0.0 1.0
HB3 A:CYS160 3.5 0.0 1.0
CB A:CYS138 3.6 0.0 1.0
CB A:CYS160 3.6 0.0 1.0
HB3 A:CYS138 3.7 0.0 1.0
HB2 A:CYS138 3.7 0.0 1.0
H A:CYS163 3.8 0.0 1.0
HG22 A:VAL159 3.9 0.0 1.0
N A:CYS160 3.9 0.0 1.0
HB A:VAL140 4.0 0.0 1.0
HB2 A:CYS143 4.0 0.0 1.0
O A:CYS143 4.1 0.0 1.0
HB3 A:ARG162 4.2 0.0 1.0
HB3 A:CYS163 4.3 0.0 1.0
CB A:ALA145 4.3 0.0 1.0
N A:CYS163 4.3 0.0 1.0
HB2 A:ALA145 4.3 0.0 1.0
CA A:CYS160 4.3 0.0 1.0
CG2 A:VAL140 4.3 0.0 1.0
H A:ALA145 4.4 0.0 1.0
CA A:CYS163 4.4 0.0 1.0
HB2 A:CYS160 4.5 0.0 1.0
HG22 A:VAL140 4.5 0.0 1.0
HA A:VAL159 4.5 0.0 1.0
C A:CYS143 4.7 0.0 1.0
HG23 A:VAL159 4.7 0.0 1.0
CA A:CYS143 4.7 0.0 1.0
HA A:CYS163 4.7 0.0 1.0
CB A:VAL140 4.7 0.0 1.0
HB1 A:ALA145 4.8 0.0 1.0
O A:CYS160 4.8 0.0 1.0
CG2 A:VAL159 4.8 0.0 1.0
C A:CYS160 4.9 0.0 1.0
HG11 A:VAL169 4.9 0.0 1.0

Zinc binding site 2 out of 2 in 1ul5

Go back to Zinc Binding Sites List in 1ul5
Zinc binding site 2 out of 2 in the Solution Structure of the Dna-Binding Domain of Squamosa Promoter Binding Protein-Like 7


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of the Dna-Binding Domain of Squamosa Promoter Binding Protein-Like 7 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn222

b:0.0
occ:1.00
NE2 A:HIS186 2.1 0.0 1.0
SG A:CYS182 2.5 0.0 1.0
SG A:CYS198 2.5 0.0 1.0
SG A:CYS179 2.5 0.0 1.0
HD2 A:HIS186 2.5 0.0 1.0
CD2 A:HIS186 2.6 0.0 1.0
H A:CYS198 3.1 0.0 1.0
HB2 A:CYS182 3.2 0.0 1.0
HB3 A:CYS198 3.2 0.0 1.0
HB3 A:GLN181 3.3 0.0 1.0
HB3 A:CYS179 3.4 0.0 1.0
CE1 A:HIS186 3.4 0.0 1.0
CB A:CYS182 3.5 0.0 1.0
CB A:CYS179 3.5 0.0 1.0
CB A:CYS198 3.5 0.0 1.0
HZ3 A:LYS184 3.6 0.0 1.0
HB2 A:CYS179 3.6 0.0 1.0
H A:CYS182 3.7 0.0 1.0
CG A:HIS186 3.9 0.0 1.0
HE1 A:HIS186 3.9 0.0 1.0
N A:CYS198 4.0 0.0 1.0
N A:CYS182 4.1 0.0 1.0
HB3 A:SER197 4.1 0.0 1.0
HB3 A:CYS182 4.2 0.0 1.0
ND1 A:HIS186 4.3 0.0 1.0
HB2 A:CYS198 4.3 0.0 1.0
NZ A:LYS184 4.4 0.0 1.0
CB A:GLN181 4.4 0.0 1.0
CA A:CYS198 4.4 0.0 1.0
HE21 A:GLN181 4.4 0.0 1.0
CA A:CYS182 4.4 0.0 1.0
HZ2 A:LYS184 4.4 0.0 1.0
NE2 A:GLN181 4.4 0.0 1.0
HZ1 A:LYS184 4.5 0.0 1.0
HE22 A:GLN181 4.5 0.0 1.0
HG3 A:LYS184 4.7 0.0 1.0
H A:GLN181 4.7 0.0 1.0
HB2 A:GLN181 4.8 0.0 1.0
C A:GLN181 4.8 0.0 1.0
CD A:GLN181 4.8 0.0 1.0
CA A:CYS179 4.9 0.0 1.0
HA A:SER197 4.9 0.0 1.0

Reference:

K.Yamasaki, T.Kigawa, M.Inoue, M.Tateno, T.Yamasaki, T.Yabuki, M.Aoki, E.Seki, T.Matsuda, E.Nunokawa, Y.Ishizuka, T.Terada, M.Shirouzu, T.Osanai, A.Tanaka, M.Seki, K.Shinozaki, S.Yokoyama. A Novel Zinc-Binding Motif Revealed By Solution Structures of Dna-Binding Domains of Arabidopsis Sbp-Family Transcription Factors. J.Mol.Biol. V. 337 49 2004.
ISSN: ISSN 0022-2836
PubMed: 15001351
DOI: 10.1016/J.JMB.2004.01.015
Page generated: Mon Jan 25 16:14:46 2021

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