Zinc in PDB 1ul4: Solution Structure of the Dna-Binding Domain of Squamosa Promoter Binding Protein-Like 4

The binding sites of Zinc atom in the Solution Structure of the Dna-Binding Domain of Squamosa Promoter Binding Protein-Like 4 (pdb code 1ul4). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Solution Structure of the Dna-Binding Domain of Squamosa Promoter Binding Protein-Like 4, PDB code: 1ul4:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Solution Structure of the Dna-Binding Domain of Squamosa Promoter Binding Protein-Like 4


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of the Dna-Binding Domain of Squamosa Promoter Binding Protein-Like 4 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn138 b:0.0 occ:1.00 ND1 A:HIS79 2.2 0.0 1.0 SG A:CYS54 2.5 0.0 1.0 SG A:CYS59 2.5 0.0 1.0 SG A:CYS76 2.5 0.0 1.0 HE1 A:HIS79 2.6 0.0 1.0 CE1 A:HIS79 2.7 0.0 1.0 HB2 A:CYS76 3.3 0.0 1.0 HB2 A:CYS54 3.4 0.0 1.0 HB A:VAL56 3.4 0.0 1.0 HB2 A:CYS59 3.4 0.0 1.0 CG A:HIS79 3.4 0.0 1.0 CB A:CYS54 3.5 0.0 1.0 CB A:CYS76 3.6 0.0 1.0 CB A:CYS59 3.6 0.0 1.0 HB3 A:CYS54 3.7 0.0 1.0 HB2 A:HIS79 3.7 0.0 1.0 HG23 A:VAL56 3.8 0.0 1.0 H A:CYS76 3.8 0.0 1.0 HB2 A:ALA61 4.0 0.0 1.0 NE2 A:HIS79 4.0 0.0 1.0 HB3 A:CYS59 4.0 0.0 1.0 CB A:HIS79 4.1 0.0 1.0 HB1 A:ALA61 4.2 0.0 1.0 HB3 A:CYS76 4.3 0.0 1.0 CD2 A:HIS79 4.3 0.0 1.0 CB A:VAL56 4.3 0.0 1.0 N A:CYS76 4.4 0.0 1.0 CG2 A:VAL56 4.5 0.0 1.0 HB3 A:HIS79 4.6 0.0 1.0 CB A:ALA61 4.6 0.0 1.0 CA A:CYS76 4.6 0.0 1.0 HG13 A:VAL56 4.6 0.0 1.0 HG22 A:VAL56 4.7 0.0 1.0 H A:ALA61 4.7 0.0 1.0 H A:VAL56 4.8 0.0 1.0 HA A:VAL75 4.8 0.0 1.0 HG22 A:VAL75 4.9 0.0 1.0 CA A:CYS54 4.9 0.0 1.0 CA A:CYS59 4.9 0.0 1.0 HA A:CYS59 5.0 0.0 1.0

Zinc binding site 2 out of 2 in the Solution Structure of the Dna-Binding Domain of Squamosa Promoter Binding Protein-Like 4


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of the Dna-Binding Domain of Squamosa Promoter Binding Protein-Like 4 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn139 b:0.0 occ:1.00 NE2 A:HIS102 2.1 0.0 1.0 HD2 A:HIS102 2.4 0.0 1.0 SG A:CYS114 2.5 0.0 1.0 SG A:CYS98 2.5 0.0 1.0 SG A:CYS95 2.5 0.0 1.0 CD2 A:HIS102 2.5 0.0 1.0 HB2 A:CYS114 2.8 0.0 1.0 HB2 A:CYS98 3.2 0.0 1.0 CB A:CYS114 3.2 0.0 1.0 H A:CYS98 3.4 0.0 1.0 CE1 A:HIS102 3.4 0.0 1.0 HB3 A:CYS95 3.4 0.0 1.0 CB A:CYS98 3.4 0.0 1.0 CB A:CYS95 3.5 0.0 1.0 HB3 A:GLN97 3.6 0.0 1.0 HB2 A:CYS95 3.8 0.0 1.0 CG A:HIS102 3.8 0.0 1.0 HB3 A:CYS114 4.0 0.0 1.0 HE1 A:HIS102 4.0 0.0 1.0 N A:CYS98 4.0 0.0 1.0 HB2 A:GLN97 4.1 0.0 1.0 ND1 A:HIS102 4.2 0.0 1.0 HB3 A:CYS98 4.3 0.0 1.0 HA A:CYS114 4.3 0.0 1.0 CA A:CYS114 4.3 0.0 1.0 CA A:CYS98 4.4 0.0 1.0 CB A:GLN97 4.4 0.0 1.0 H A:CYS114 4.5 0.0 1.0 HE21 A:GLN97 4.6 0.0 1.0 N A:CYS114 4.8 0.0 1.0 HB2 A:ARG100 4.8 0.0 1.0 O A:CYS95 4.9 0.0 1.0 NE2 A:GLN97 4.9 0.0 1.0 C A:GLN97 4.9 0.0 1.0 H A:ARG100 4.9 0.0 1.0 CA A:CYS95 4.9 0.0 1.0

K.Yamasaki, T.Kigawa, M.Inoue, M.Tateno, T.Yamasaki, T.Yabuki, M.Aoki, E.Seki, T.Matsuda, E.Nunokawa, Y.Ishizuka, T.Terada, M.Shirouzu, T.Osanai, A.Tanaka, M.Seki, K.Shinozaki, S.Yokoyama. A Novel Zinc-Binding Motif Revealed By Solution Structures of Dna-Binding Domains of Arabidopsis Sbp-Family Transcription Factors. J.Mol.Biol. V. 337 49 2004.
ISSN: ISSN 0022-2836
PubMed: 15001351
DOI: 10.1016/J.JMB.2004.01.015