Zinc in PDB 1u9k: Crystal Structure of Mouse Triggering Receptor Expressed on Myeloid Cells 1 (Trem-1) at 1.76

The structure of Crystal Structure of Mouse Triggering Receptor Expressed on Myeloid Cells 1 (Trem-1) at 1.76, PDB code: 1u9k was solved by M.S.Kelker, E.W.Debler, I.A.Wilson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	31.47 / 1.76
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	47.837, 49.081, 125.208, 90.00, 90.00, 90.00
R / Rfree (%)	22.5 / 24.8

The binding sites of Zinc atom in the Crystal Structure of Mouse Triggering Receptor Expressed on Myeloid Cells 1 (Trem-1) at 1.76 (pdb code 1u9k). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the Crystal Structure of Mouse Triggering Receptor Expressed on Myeloid Cells 1 (Trem-1) at 1.76, PDB code: 1u9k:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in the Crystal Structure of Mouse Triggering Receptor Expressed on Myeloid Cells 1 (Trem-1) at 1.76


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Mouse Triggering Receptor Expressed on Myeloid Cells 1 (Trem-1) at 1.76 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn135 b:35.4 occ:1.00 OE2 A:GLU33 1.8 18.5 1.0 OXT A:THR134 2.0 21.4 1.0 C A:THR134 2.7 22.7 1.0 O A:THR134 2.7 19.5 1.0 CD A:GLU33 2.9 24.9 1.0 CG A:GLU33 3.3 19.9 1.0 OE1 A:GLU33 4.1 27.8 1.0 CA A:THR134 4.1 22.2 1.0 CB A:GLU33 4.4 16.9 1.0 CG2 A:VAL105 4.5 23.3 1.0 CB A:THR134 4.7 24.9 1.0 OG1 A:THR134 4.9 23.8 1.0 CG1 A:VAL32 4.9 16.0 1.0 N A:GLU33 4.9 16.0 1.0

Zinc binding site 2 out of 3 in the Crystal Structure of Mouse Triggering Receptor Expressed on Myeloid Cells 1 (Trem-1) at 1.76


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Mouse Triggering Receptor Expressed on Myeloid Cells 1 (Trem-1) at 1.76 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn136 b:55.2 occ:1.00 ND1 A:HIS117 2.3 26.3 1.0 CE1 A:HIS117 3.2 27.2 1.0 CG A:HIS117 3.3 23.5 1.0 CB A:HIS117 3.5 21.5 1.0 OG A:SER51 4.1 22.4 1.0 CG2 A:ILE115 4.2 22.4 1.0 NE2 A:HIS117 4.4 23.7 1.0 O A:HOH140 4.4 32.2 1.0 CD2 A:HIS117 4.4 25.8 1.0 CB A:SER51 4.8 18.8 1.0

Zinc binding site 3 out of 3 in the Crystal Structure of Mouse Triggering Receptor Expressed on Myeloid Cells 1 (Trem-1) at 1.76


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of Mouse Triggering Receptor Expressed on Myeloid Cells 1 (Trem-1) at 1.76 within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn135 b:43.1 occ:1.00 OE2 B:GLU33 1.8 25.1 1.0 OXT B:THR134 1.8 16.4 1.0 C B:THR134 2.7 19.0 1.0 O B:THR134 2.8 15.5 1.0 CD B:GLU33 2.9 23.5 1.0 CG B:GLU33 3.5 21.6 1.0 OE1 B:GLU33 3.9 23.4 1.0 CA B:THR134 4.2 19.3 1.0 CB B:GLU33 4.5 20.0 1.0 CG1 B:VAL32 4.8 19.6 1.0 CG2 B:VAL105 4.8 21.6 1.0 CB B:THR134 4.8 20.1 1.0 N B:GLU33 4.9 18.8 1.0

M.S.Kelker, E.W.Debler, I.A.Wilson. Crystal Structure of Mouse Triggering Receptor Expressed on Myeloid Cells 1 (Trem-1) at 1.76A J.Mol.Biol. V. 344 1175 2004.
ISSN: ISSN 0022-2836
PubMed: 15561137
DOI: 10.1016/J.JMB.2004.10.009