Atomistry » Zinc » PDB 1u1u-1uho » 1u9k
Atomistry »
  Zinc »
    PDB 1u1u-1uho »
      1u9k »

Zinc in PDB 1u9k: Crystal Structure of Mouse Triggering Receptor Expressed on Myeloid Cells 1 (Trem-1) at 1.76

Protein crystallography data

The structure of Crystal Structure of Mouse Triggering Receptor Expressed on Myeloid Cells 1 (Trem-1) at 1.76, PDB code: 1u9k was solved by M.S.Kelker, E.W.Debler, I.A.Wilson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 31.47 / 1.76
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 47.837, 49.081, 125.208, 90.00, 90.00, 90.00
R / Rfree (%) 22.5 / 24.8

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Mouse Triggering Receptor Expressed on Myeloid Cells 1 (Trem-1) at 1.76 (pdb code 1u9k). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the Crystal Structure of Mouse Triggering Receptor Expressed on Myeloid Cells 1 (Trem-1) at 1.76, PDB code: 1u9k:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in 1u9k

Go back to Zinc Binding Sites List in 1u9k
Zinc binding site 1 out of 3 in the Crystal Structure of Mouse Triggering Receptor Expressed on Myeloid Cells 1 (Trem-1) at 1.76


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Mouse Triggering Receptor Expressed on Myeloid Cells 1 (Trem-1) at 1.76 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn135

b:35.4
occ:1.00
OE2 A:GLU33 1.8 18.5 1.0
OXT A:THR134 2.0 21.4 1.0
C A:THR134 2.7 22.7 1.0
O A:THR134 2.7 19.5 1.0
CD A:GLU33 2.9 24.9 1.0
CG A:GLU33 3.3 19.9 1.0
OE1 A:GLU33 4.1 27.8 1.0
CA A:THR134 4.1 22.2 1.0
CB A:GLU33 4.4 16.9 1.0
CG2 A:VAL105 4.5 23.3 1.0
CB A:THR134 4.7 24.9 1.0
OG1 A:THR134 4.9 23.8 1.0
CG1 A:VAL32 4.9 16.0 1.0
N A:GLU33 4.9 16.0 1.0

Zinc binding site 2 out of 3 in 1u9k

Go back to Zinc Binding Sites List in 1u9k
Zinc binding site 2 out of 3 in the Crystal Structure of Mouse Triggering Receptor Expressed on Myeloid Cells 1 (Trem-1) at 1.76


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Mouse Triggering Receptor Expressed on Myeloid Cells 1 (Trem-1) at 1.76 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn136

b:55.2
occ:1.00
ND1 A:HIS117 2.3 26.3 1.0
CE1 A:HIS117 3.2 27.2 1.0
CG A:HIS117 3.3 23.5 1.0
CB A:HIS117 3.5 21.5 1.0
OG A:SER51 4.1 22.4 1.0
CG2 A:ILE115 4.2 22.4 1.0
NE2 A:HIS117 4.4 23.7 1.0
O A:HOH140 4.4 32.2 1.0
CD2 A:HIS117 4.4 25.8 1.0
CB A:SER51 4.8 18.8 1.0

Zinc binding site 3 out of 3 in 1u9k

Go back to Zinc Binding Sites List in 1u9k
Zinc binding site 3 out of 3 in the Crystal Structure of Mouse Triggering Receptor Expressed on Myeloid Cells 1 (Trem-1) at 1.76


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of Mouse Triggering Receptor Expressed on Myeloid Cells 1 (Trem-1) at 1.76 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn135

b:43.1
occ:1.00
OE2 B:GLU33 1.8 25.1 1.0
OXT B:THR134 1.8 16.4 1.0
C B:THR134 2.7 19.0 1.0
O B:THR134 2.8 15.5 1.0
CD B:GLU33 2.9 23.5 1.0
CG B:GLU33 3.5 21.6 1.0
OE1 B:GLU33 3.9 23.4 1.0
CA B:THR134 4.2 19.3 1.0
CB B:GLU33 4.5 20.0 1.0
CG1 B:VAL32 4.8 19.6 1.0
CG2 B:VAL105 4.8 21.6 1.0
CB B:THR134 4.8 20.1 1.0
N B:GLU33 4.9 18.8 1.0

Reference:

M.S.Kelker, E.W.Debler, I.A.Wilson. Crystal Structure of Mouse Triggering Receptor Expressed on Myeloid Cells 1 (Trem-1) at 1.76A J.Mol.Biol. V. 344 1175 2004.
ISSN: ISSN 0022-2836
PubMed: 15561137
DOI: 10.1016/J.JMB.2004.10.009
Page generated: Wed Oct 16 19:29:18 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy