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Zinc in PDB 1u7j: Solution Structure of A Diiron Protein Model

Zinc Binding Sites:

The binding sites of Zinc atom in the Solution Structure of A Diiron Protein Model (pdb code 1u7j). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Solution Structure of A Diiron Protein Model, PDB code: 1u7j:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 1u7j

Go back to Zinc Binding Sites List in 1u7j
Zinc binding site 1 out of 2 in the Solution Structure of A Diiron Protein Model


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of A Diiron Protein Model within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn50

b:0.0
occ:1.00
OE2 B:GLU37 1.8 0.0 1.0
OE1 A:GLU37 1.8 0.0 1.0
OE2 A:GLU11 1.8 0.0 1.0
OE1 A:GLU11 1.9 0.0 1.0
ND1 A:HIS40 2.1 0.0 1.0
CD A:GLU11 2.3 0.0 1.0
CD A:GLU37 2.8 0.0 1.0
HB3 A:HIS40 3.0 0.0 1.0
OE2 A:GLU37 3.0 0.0 1.0
CD B:GLU37 3.0 0.0 1.0
CG A:HIS40 3.1 0.0 1.0
CE1 A:HIS40 3.2 0.0 1.0
CB A:HIS40 3.3 0.0 1.0
HB2 A:HIS40 3.4 0.0 1.0
HE1 A:HIS40 3.5 0.0 1.0
OE1 B:GLU37 3.6 0.0 1.0
CG A:GLU11 3.8 0.0 1.0
HA A:GLU37 3.8 0.0 1.0
HE2 B:TYR18 3.8 0.0 1.0
ZN B:ZN150 4.0 0.0 1.0
CG B:GLU37 4.1 0.0 1.0
HG2 B:GLU37 4.1 0.0 1.0
CG A:GLU37 4.2 0.0 1.0
HB3 A:GLU11 4.2 0.0 1.0
HG3 A:GLU11 4.2 0.0 1.0
HG22 B:ILE33 4.3 0.0 1.0
CD2 A:HIS40 4.3 0.0 1.0
HG3 B:GLU37 4.3 0.0 1.0
NE2 A:HIS40 4.3 0.0 1.0
HG2 A:GLU11 4.4 0.0 1.0
HB3 A:GLU37 4.5 0.0 1.0
OE1 B:GLU11 4.5 0.0 1.0
CE2 B:TYR18 4.5 0.0 1.0
CB A:GLU11 4.6 0.0 1.0
HE1 B:HIS40 4.6 0.0 1.0
CB A:GLU37 4.7 0.0 1.0
HA A:GLU11 4.7 0.0 1.0
CA A:GLU37 4.7 0.0 1.0
HG3 A:GLU37 4.8 0.0 1.0
HG2 A:GLU37 4.8 0.0 1.0
OH B:TYR18 4.8 0.0 1.0
CA A:HIS40 4.8 0.0 1.0
HG23 B:ILE33 4.9 0.0 1.0
HB3 B:ALA14 4.9 0.0 1.0
ND1 B:HIS40 5.0 0.0 1.0
CZ B:TYR18 5.0 0.0 1.0

Zinc binding site 2 out of 2 in 1u7j

Go back to Zinc Binding Sites List in 1u7j
Zinc binding site 2 out of 2 in the Solution Structure of A Diiron Protein Model


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of A Diiron Protein Model within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn150

b:0.0
occ:1.00
OE2 A:GLU37 1.8 0.0 1.0
OE1 B:GLU37 1.8 0.0 1.0
OE2 B:GLU11 1.8 0.0 1.0
OE1 B:GLU11 1.9 0.0 1.0
ND1 B:HIS40 2.1 0.0 1.0
CD B:GLU11 2.3 0.0 1.0
CD B:GLU37 2.8 0.0 1.0
HB3 B:HIS40 3.0 0.0 1.0
CD A:GLU37 3.0 0.0 1.0
CG B:HIS40 3.0 0.0 1.0
OE2 B:GLU37 3.1 0.0 1.0
CE1 B:HIS40 3.2 0.0 1.0
HB2 B:HIS40 3.2 0.0 1.0
CB B:HIS40 3.3 0.0 1.0
HE1 B:HIS40 3.5 0.0 1.0
OE1 A:GLU37 3.7 0.0 1.0
HA B:GLU37 3.7 0.0 1.0
CG B:GLU11 3.8 0.0 1.0
ZN A:ZN50 4.0 0.0 1.0
HG2 A:GLU37 4.0 0.0 1.0
CG A:GLU37 4.0 0.0 1.0
HG3 A:GLU37 4.1 0.0 1.0
HB3 B:GLU11 4.1 0.0 1.0
HG22 A:ILE33 4.2 0.0 1.0
CG B:GLU37 4.2 0.0 1.0
HG3 B:GLU11 4.2 0.0 1.0
CD2 B:HIS40 4.2 0.0 1.0
NE2 B:HIS40 4.3 0.0 1.0
OE1 A:GLU11 4.4 0.0 1.0
HG2 B:GLU11 4.4 0.0 1.0
HB3 B:GLU37 4.5 0.0 1.0
HE2 A:TYR18 4.5 0.0 1.0
HA B:GLU11 4.5 0.0 1.0
CB B:GLU11 4.5 0.0 1.0
CA B:GLU37 4.6 0.0 1.0
CB B:GLU37 4.7 0.0 1.0
HE1 A:HIS40 4.7 0.0 1.0
CA B:HIS40 4.8 0.0 1.0
HG23 A:ILE33 4.8 0.0 1.0
HG2 B:GLU37 4.8 0.0 1.0
HG3 B:GLU37 4.9 0.0 1.0
CG2 A:ILE33 4.9 0.0 1.0

Reference:

S.J.Lahr, D.E.Engel, S.E.Stayrook, O.Maglio, B.North, S.Geremia, A.Lombardi, W.F.Degrado. Analysis and Design of Turns in Alpha-Helical Hairpins J.Mol.Biol. V. 346 1441 2005.
ISSN: ISSN 0022-2836
PubMed: 15713492
DOI: 10.1016/J.JMB.2004.12.016
Page generated: Wed Oct 16 19:28:30 2024

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