Zinc in PDB 1tf3: Tfiiia Finger 1-3 Bound to Dna, uc(Nmr), 22 Structures
Zinc Binding Sites:
The binding sites of Zinc atom in the Tfiiia Finger 1-3 Bound to Dna, uc(Nmr), 22 Structures
(pdb code 1tf3). This binding sites where shown within
5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the
Tfiiia Finger 1-3 Bound to Dna, uc(Nmr), 22 Structures, PDB code: 1tf3:
Jump to Zinc binding site number:
1;
2;
3;
Zinc binding site 1 out
of 3 in 1tf3
Go back to
Zinc Binding Sites List in 1tf3
Zinc binding site 1 out
of 3 in the Tfiiia Finger 1-3 Bound to Dna, uc(Nmr), 22 Structures
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 1 of Tfiiia Finger 1-3 Bound to Dna, uc(Nmr), 22 Structures within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn102
b:0.0
occ:1.00
|
NE2
|
A:HIS33
|
2.1
|
0.0
|
1.0
|
NE2
|
A:HIS37
|
2.1
|
0.0
|
1.0
|
SG
|
A:CYS20
|
2.3
|
0.0
|
1.0
|
SG
|
A:CYS15
|
2.3
|
0.0
|
1.0
|
CD2
|
A:HIS33
|
3.0
|
0.0
|
1.0
|
CD2
|
A:HIS37
|
3.1
|
0.0
|
1.0
|
CE1
|
A:HIS37
|
3.1
|
0.0
|
1.0
|
HD2
|
A:HIS33
|
3.2
|
0.0
|
1.0
|
CE1
|
A:HIS33
|
3.2
|
0.0
|
1.0
|
HB3
|
A:CYS20
|
3.2
|
0.0
|
1.0
|
CB
|
A:CYS20
|
3.2
|
0.0
|
1.0
|
HD2
|
A:HIS37
|
3.3
|
0.0
|
1.0
|
HB2
|
A:CYS20
|
3.3
|
0.0
|
1.0
|
HE1
|
A:HIS37
|
3.4
|
0.0
|
1.0
|
HB2
|
A:ALA22
|
3.4
|
0.0
|
1.0
|
HE1
|
A:HIS33
|
3.5
|
0.0
|
1.0
|
CB
|
A:CYS15
|
3.6
|
0.0
|
1.0
|
HB2
|
A:CYS15
|
3.6
|
0.0
|
1.0
|
HD2
|
A:PHE17
|
3.6
|
0.0
|
1.0
|
HB2
|
A:PHE17
|
3.7
|
0.0
|
1.0
|
HB3
|
A:CYS15
|
3.8
|
0.0
|
1.0
|
HB1
|
A:ALA22
|
4.0
|
0.0
|
1.0
|
CB
|
A:ALA22
|
4.2
|
0.0
|
1.0
|
CG
|
A:HIS33
|
4.2
|
0.0
|
1.0
|
ND1
|
A:HIS37
|
4.3
|
0.0
|
1.0
|
CG
|
A:HIS37
|
4.3
|
0.0
|
1.0
|
ND1
|
A:HIS33
|
4.3
|
0.0
|
1.0
|
HD22
|
A:LEU34
|
4.4
|
0.0
|
1.0
|
H
|
A:ALA22
|
4.4
|
0.0
|
1.0
|
CD2
|
A:PHE17
|
4.6
|
0.0
|
1.0
|
CA
|
A:CYS20
|
4.7
|
0.0
|
1.0
|
HB3
|
A:ALA22
|
4.7
|
0.0
|
1.0
|
CB
|
A:PHE17
|
4.8
|
0.0
|
1.0
|
H
|
A:PHE17
|
4.8
|
0.0
|
1.0
|
HA
|
A:LEU34
|
4.9
|
0.0
|
1.0
|
CA
|
A:CYS15
|
4.9
|
0.0
|
1.0
|
|
Zinc binding site 2 out
of 3 in 1tf3
Go back to
Zinc Binding Sites List in 1tf3
Zinc binding site 2 out
of 3 in the Tfiiia Finger 1-3 Bound to Dna, uc(Nmr), 22 Structures
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 2 of Tfiiia Finger 1-3 Bound to Dna, uc(Nmr), 22 Structures within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn2
b:0.0
occ:1.00
|
NE2
|
A:HIS67
|
2.1
|
0.0
|
1.0
|
NE2
|
A:HIS63
|
2.1
|
0.0
|
1.0
|
SG
|
A:CYS50
|
2.3
|
0.0
|
1.0
|
SG
|
A:CYS45
|
2.3
|
0.0
|
1.0
|
HE1
|
A:HIS63
|
2.8
|
0.0
|
1.0
|
CE1
|
A:HIS63
|
2.8
|
0.0
|
1.0
|
CE1
|
A:HIS67
|
3.1
|
0.0
|
1.0
|
CD2
|
A:HIS67
|
3.1
|
0.0
|
1.0
|
HE1
|
A:HIS67
|
3.3
|
0.0
|
1.0
|
CD2
|
A:HIS63
|
3.3
|
0.0
|
1.0
|
HD2
|
A:HIS67
|
3.3
|
0.0
|
1.0
|
HB3
|
A:CYS50
|
3.5
|
0.0
|
1.0
|
CB
|
A:CYS50
|
3.6
|
0.0
|
1.0
|
HG3
|
A:LYS52
|
3.6
|
0.0
|
1.0
|
CB
|
A:CYS45
|
3.7
|
0.0
|
1.0
|
O
|
A:CYS50
|
3.7
|
0.0
|
1.0
|
HB2
|
A:CYS45
|
3.7
|
0.0
|
1.0
|
HD2
|
A:HIS63
|
3.8
|
0.0
|
1.0
|
HG2
|
A:LYS52
|
3.9
|
0.0
|
1.0
|
HZ3
|
A:LYS52
|
3.9
|
0.0
|
1.0
|
HB3
|
A:CYS45
|
3.9
|
0.0
|
1.0
|
HB2
|
A:GLU47
|
3.9
|
0.0
|
1.0
|
ND1
|
A:HIS63
|
4.0
|
0.0
|
1.0
|
OE2
|
A:GLU47
|
4.2
|
0.0
|
1.0
|
ND1
|
A:HIS67
|
4.2
|
0.0
|
1.0
|
CG
|
A:LYS52
|
4.2
|
0.0
|
1.0
|
HB2
|
A:CYS50
|
4.3
|
0.0
|
1.0
|
CG
|
A:HIS67
|
4.3
|
0.0
|
1.0
|
CG
|
A:HIS63
|
4.3
|
0.0
|
1.0
|
HB2
|
A:LYS52
|
4.3
|
0.0
|
1.0
|
CD
|
A:GLU47
|
4.5
|
0.0
|
1.0
|
H
|
A:LYS52
|
4.5
|
0.0
|
1.0
|
C
|
A:CYS50
|
4.6
|
0.0
|
1.0
|
CA
|
A:CYS50
|
4.7
|
0.0
|
1.0
|
HE1
|
A:PHE54
|
4.8
|
0.0
|
1.0
|
HD1
|
A:HIS63
|
4.9
|
0.0
|
1.0
|
OE1
|
A:GLU47
|
4.9
|
0.0
|
1.0
|
CB
|
A:GLU47
|
4.9
|
0.0
|
1.0
|
NZ
|
A:LYS52
|
4.9
|
0.0
|
1.0
|
HG3
|
A:GLU47
|
4.9
|
0.0
|
1.0
|
CB
|
A:LYS52
|
4.9
|
0.0
|
1.0
|
CG
|
A:GLU47
|
5.0
|
0.0
|
1.0
|
|
Zinc binding site 3 out
of 3 in 1tf3
Go back to
Zinc Binding Sites List in 1tf3
Zinc binding site 3 out
of 3 in the Tfiiia Finger 1-3 Bound to Dna, uc(Nmr), 22 Structures
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 3 of Tfiiia Finger 1-3 Bound to Dna, uc(Nmr), 22 Structures within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn3
b:0.0
occ:1.00
|
NE2
|
A:HIS93
|
2.1
|
0.0
|
1.0
|
NE2
|
A:HIS98
|
2.1
|
0.0
|
1.0
|
SG
|
A:CYS80
|
2.3
|
0.0
|
1.0
|
SG
|
A:CYS75
|
2.3
|
0.0
|
1.0
|
CE1
|
A:HIS98
|
3.0
|
0.0
|
1.0
|
HE1
|
A:HIS98
|
3.1
|
0.0
|
1.0
|
CD2
|
A:HIS93
|
3.1
|
0.0
|
1.0
|
CE1
|
A:HIS93
|
3.1
|
0.0
|
1.0
|
CD2
|
A:HIS98
|
3.3
|
0.0
|
1.0
|
HD2
|
A:HIS93
|
3.3
|
0.0
|
1.0
|
HB3
|
A:SER77
|
3.3
|
0.0
|
1.0
|
HE1
|
A:HIS93
|
3.4
|
0.0
|
1.0
|
HD2
|
A:HIS98
|
3.6
|
0.0
|
1.0
|
CB
|
A:CYS75
|
3.6
|
0.0
|
1.0
|
O
|
A:CYS80
|
3.7
|
0.0
|
1.0
|
HG
|
A:SER77
|
3.7
|
0.0
|
1.0
|
HB2
|
A:SER77
|
3.8
|
0.0
|
1.0
|
HB3
|
A:CYS75
|
3.8
|
0.0
|
1.0
|
HB2
|
A:CYS75
|
3.8
|
0.0
|
1.0
|
CB
|
A:CYS80
|
3.8
|
0.0
|
1.0
|
HB3
|
A:CYS80
|
3.9
|
0.0
|
1.0
|
HA
|
A:PHE94
|
4.0
|
0.0
|
1.0
|
CB
|
A:SER77
|
4.0
|
0.0
|
1.0
|
HD11
|
A:LEU82
|
4.0
|
0.0
|
1.0
|
HB2
|
A:PHE97
|
4.1
|
0.0
|
1.0
|
ND1
|
A:HIS98
|
4.2
|
0.0
|
1.0
|
CG
|
A:HIS93
|
4.2
|
0.0
|
1.0
|
ND1
|
A:HIS93
|
4.3
|
0.0
|
1.0
|
CG
|
A:HIS98
|
4.3
|
0.0
|
1.0
|
OG
|
A:SER77
|
4.3
|
0.0
|
1.0
|
HB3
|
A:PHE97
|
4.5
|
0.0
|
1.0
|
HD2
|
A:PHE94
|
4.5
|
0.0
|
1.0
|
HB2
|
A:CYS80
|
4.5
|
0.0
|
1.0
|
HB2
|
A:LEU82
|
4.5
|
0.0
|
1.0
|
C
|
A:CYS80
|
4.6
|
0.0
|
1.0
|
H
|
A:LEU82
|
4.7
|
0.0
|
1.0
|
CB
|
A:PHE97
|
4.8
|
0.0
|
1.0
|
CA
|
A:CYS80
|
4.8
|
0.0
|
1.0
|
HE1
|
A:PHE84
|
4.9
|
0.0
|
1.0
|
CD2
|
A:PHE94
|
5.0
|
0.0
|
1.0
|
CA
|
A:PHE94
|
5.0
|
0.0
|
1.0
|
|
Reference:
M.P.Foster,
D.S.Wuttke,
I.Radhakrishnan,
D.A.Case,
J.M.Gottesfeld,
P.E.Wright.
Domain Packing and Dynamics in the Dna Complex of the N-Terminal Zinc Fingers of Tfiiia. Nat.Struct.Biol. V. 4 605 1997.
ISSN: ISSN 1072-8368
PubMed: 9253405
DOI: 10.1038/NSB0897-605
Page generated: Wed Oct 16 19:06:30 2024
|