Zinc in PDB 1tf3: Tfiiia Finger 1-3 Bound to Dna, uc(Nmr), 22 Structures

The binding sites of Zinc atom in the Tfiiia Finger 1-3 Bound to Dna, uc(Nmr), 22 Structures (pdb code 1tf3). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the Tfiiia Finger 1-3 Bound to Dna, uc(Nmr), 22 Structures, PDB code: 1tf3:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in the Tfiiia Finger 1-3 Bound to Dna, uc(Nmr), 22 Structures


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Tfiiia Finger 1-3 Bound to Dna, uc(Nmr), 22 Structures within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn102 b:0.0 occ:1.00 NE2 A:HIS33 2.1 0.0 1.0 NE2 A:HIS37 2.1 0.0 1.0 SG A:CYS20 2.3 0.0 1.0 SG A:CYS15 2.3 0.0 1.0 CD2 A:HIS33 3.0 0.0 1.0 CD2 A:HIS37 3.1 0.0 1.0 CE1 A:HIS37 3.1 0.0 1.0 HD2 A:HIS33 3.2 0.0 1.0 CE1 A:HIS33 3.2 0.0 1.0 HB3 A:CYS20 3.2 0.0 1.0 CB A:CYS20 3.2 0.0 1.0 HD2 A:HIS37 3.3 0.0 1.0 HB2 A:CYS20 3.3 0.0 1.0 HE1 A:HIS37 3.4 0.0 1.0 HB2 A:ALA22 3.4 0.0 1.0 HE1 A:HIS33 3.5 0.0 1.0 CB A:CYS15 3.6 0.0 1.0 HB2 A:CYS15 3.6 0.0 1.0 HD2 A:PHE17 3.6 0.0 1.0 HB2 A:PHE17 3.7 0.0 1.0 HB3 A:CYS15 3.8 0.0 1.0 HB1 A:ALA22 4.0 0.0 1.0 CB A:ALA22 4.2 0.0 1.0 CG A:HIS33 4.2 0.0 1.0 ND1 A:HIS37 4.3 0.0 1.0 CG A:HIS37 4.3 0.0 1.0 ND1 A:HIS33 4.3 0.0 1.0 HD22 A:LEU34 4.4 0.0 1.0 H A:ALA22 4.4 0.0 1.0 CD2 A:PHE17 4.6 0.0 1.0 CA A:CYS20 4.7 0.0 1.0 HB3 A:ALA22 4.7 0.0 1.0 CB A:PHE17 4.8 0.0 1.0 H A:PHE17 4.8 0.0 1.0 HA A:LEU34 4.9 0.0 1.0 CA A:CYS15 4.9 0.0 1.0

Zinc binding site 2 out of 3 in the Tfiiia Finger 1-3 Bound to Dna, uc(Nmr), 22 Structures


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Tfiiia Finger 1-3 Bound to Dna, uc(Nmr), 22 Structures within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn2 b:0.0 occ:1.00 NE2 A:HIS67 2.1 0.0 1.0 NE2 A:HIS63 2.1 0.0 1.0 SG A:CYS50 2.3 0.0 1.0 SG A:CYS45 2.3 0.0 1.0 HE1 A:HIS63 2.8 0.0 1.0 CE1 A:HIS63 2.8 0.0 1.0 CE1 A:HIS67 3.1 0.0 1.0 CD2 A:HIS67 3.1 0.0 1.0 HE1 A:HIS67 3.3 0.0 1.0 CD2 A:HIS63 3.3 0.0 1.0 HD2 A:HIS67 3.3 0.0 1.0 HB3 A:CYS50 3.5 0.0 1.0 CB A:CYS50 3.6 0.0 1.0 HG3 A:LYS52 3.6 0.0 1.0 CB A:CYS45 3.7 0.0 1.0 O A:CYS50 3.7 0.0 1.0 HB2 A:CYS45 3.7 0.0 1.0 HD2 A:HIS63 3.8 0.0 1.0 HG2 A:LYS52 3.9 0.0 1.0 HZ3 A:LYS52 3.9 0.0 1.0 HB3 A:CYS45 3.9 0.0 1.0 HB2 A:GLU47 3.9 0.0 1.0 ND1 A:HIS63 4.0 0.0 1.0 OE2 A:GLU47 4.2 0.0 1.0 ND1 A:HIS67 4.2 0.0 1.0 CG A:LYS52 4.2 0.0 1.0 HB2 A:CYS50 4.3 0.0 1.0 CG A:HIS67 4.3 0.0 1.0 CG A:HIS63 4.3 0.0 1.0 HB2 A:LYS52 4.3 0.0 1.0 CD A:GLU47 4.5 0.0 1.0 H A:LYS52 4.5 0.0 1.0 C A:CYS50 4.6 0.0 1.0 CA A:CYS50 4.7 0.0 1.0 HE1 A:PHE54 4.8 0.0 1.0 HD1 A:HIS63 4.9 0.0 1.0 OE1 A:GLU47 4.9 0.0 1.0 CB A:GLU47 4.9 0.0 1.0 NZ A:LYS52 4.9 0.0 1.0 HG3 A:GLU47 4.9 0.0 1.0 CB A:LYS52 4.9 0.0 1.0 CG A:GLU47 5.0 0.0 1.0

Zinc binding site 3 out of 3 in the Tfiiia Finger 1-3 Bound to Dna, uc(Nmr), 22 Structures


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Tfiiia Finger 1-3 Bound to Dna, uc(Nmr), 22 Structures within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn3 b:0.0 occ:1.00 NE2 A:HIS93 2.1 0.0 1.0 NE2 A:HIS98 2.1 0.0 1.0 SG A:CYS80 2.3 0.0 1.0 SG A:CYS75 2.3 0.0 1.0 CE1 A:HIS98 3.0 0.0 1.0 HE1 A:HIS98 3.1 0.0 1.0 CD2 A:HIS93 3.1 0.0 1.0 CE1 A:HIS93 3.1 0.0 1.0 CD2 A:HIS98 3.3 0.0 1.0 HD2 A:HIS93 3.3 0.0 1.0 HB3 A:SER77 3.3 0.0 1.0 HE1 A:HIS93 3.4 0.0 1.0 HD2 A:HIS98 3.6 0.0 1.0 CB A:CYS75 3.6 0.0 1.0 O A:CYS80 3.7 0.0 1.0 HG A:SER77 3.7 0.0 1.0 HB2 A:SER77 3.8 0.0 1.0 HB3 A:CYS75 3.8 0.0 1.0 HB2 A:CYS75 3.8 0.0 1.0 CB A:CYS80 3.8 0.0 1.0 HB3 A:CYS80 3.9 0.0 1.0 HA A:PHE94 4.0 0.0 1.0 CB A:SER77 4.0 0.0 1.0 HD11 A:LEU82 4.0 0.0 1.0 HB2 A:PHE97 4.1 0.0 1.0 ND1 A:HIS98 4.2 0.0 1.0 CG A:HIS93 4.2 0.0 1.0 ND1 A:HIS93 4.3 0.0 1.0 CG A:HIS98 4.3 0.0 1.0 OG A:SER77 4.3 0.0 1.0 HB3 A:PHE97 4.5 0.0 1.0 HD2 A:PHE94 4.5 0.0 1.0 HB2 A:CYS80 4.5 0.0 1.0 HB2 A:LEU82 4.5 0.0 1.0 C A:CYS80 4.6 0.0 1.0 H A:LEU82 4.7 0.0 1.0 CB A:PHE97 4.8 0.0 1.0 CA A:CYS80 4.8 0.0 1.0 HE1 A:PHE84 4.9 0.0 1.0 CD2 A:PHE94 5.0 0.0 1.0 CA A:PHE94 5.0 0.0 1.0

M.P.Foster, D.S.Wuttke, I.Radhakrishnan, D.A.Case, J.M.Gottesfeld, P.E.Wright. Domain Packing and Dynamics in the Dna Complex of the N-Terminal Zinc Fingers of Tfiiia. Nat.Struct.Biol. V. 4 605 1997.
ISSN: ISSN 1072-8368
PubMed: 9253405
DOI: 10.1038/NSB0897-605