Zinc in PDB 1ta9: Crystal Structure of Glycerol Dehydrogenase From Schizosaccharomyces Pombe

All present enzymatic activity of Crystal Structure of Glycerol Dehydrogenase From Schizosaccharomyces Pombe:
1.1.1.6;

The structure of Crystal Structure of Glycerol Dehydrogenase From Schizosaccharomyces Pombe, PDB code: 1ta9 was solved by A.M.Mulichak, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.00 / 1.90
Space group	I 4
Cell size a, b, c (Å), α, β, γ (°)	105.980, 105.980, 140.630, 90.00, 90.00, 90.00
R / Rfree (%)	18.6 / 20.9

The structure of Crystal Structure of Glycerol Dehydrogenase From Schizosaccharomyces Pombe also contains other interesting chemical elements:

Potassium

(K)

2 atoms

The binding sites of Zinc atom in the Crystal Structure of Glycerol Dehydrogenase From Schizosaccharomyces Pombe (pdb code 1ta9). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of Glycerol Dehydrogenase From Schizosaccharomyces Pombe, PDB code: 1ta9:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of Glycerol Dehydrogenase From Schizosaccharomyces Pombe


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Glycerol Dehydrogenase From Schizosaccharomyces Pombe within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1502 b:33.9 occ:1.00 NE2 A:HIS315 2.2 16.2 1.0 OD2 A:ASP232 2.2 14.4 1.0 NE2 A:HIS333 2.3 18.0 1.0 O2 A:GOL1401 2.4 31.1 1.0 O3 A:GOL1401 2.4 30.9 1.0 OD1 A:ASP232 2.6 14.3 1.0 CG A:ASP232 2.7 13.9 1.0 C3 A:GOL1401 3.1 31.1 1.0 CD2 A:HIS333 3.1 17.6 1.0 CE1 A:HIS315 3.1 16.1 1.0 C2 A:GOL1401 3.2 31.1 1.0 CD2 A:HIS315 3.2 15.9 1.0 CE1 A:HIS333 3.3 18.1 1.0 OD1 A:ASP182 3.8 21.8 1.0 K A:K1503 4.2 17.6 1.0 CB A:ASP232 4.2 12.9 1.0 CG2 A:VAL337 4.2 12.5 1.0 ND1 A:HIS315 4.2 16.0 1.0 CG A:HIS333 4.3 17.3 1.0 CG A:HIS315 4.3 15.9 1.0 ND1 A:HIS333 4.4 18.0 1.0 CG A:ASP182 4.5 22.0 1.0 OD2 A:ASP182 4.5 22.1 1.0 O A:HOH1814 4.5 39.8 1.0 C1 A:GOL1401 4.5 31.0 1.0 CA A:ASP232 4.9 12.5 1.0 O A:HOH1871 4.9 40.9 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of Glycerol Dehydrogenase From Schizosaccharomyces Pombe


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Glycerol Dehydrogenase From Schizosaccharomyces Pombe within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn1501 b:34.2 occ:1.00 NE2 B:HIS315 2.2 16.0 1.0 OD2 B:ASP232 2.2 13.8 1.0 NE2 B:HIS333 2.3 17.9 1.0 O3 B:GOL1402 2.3 31.5 1.0 O2 B:GOL1402 2.4 32.0 1.0 OD1 B:ASP232 2.6 13.4 1.0 CG B:ASP232 2.7 13.4 1.0 C3 B:GOL1402 3.0 31.8 1.0 CD2 B:HIS333 3.1 17.6 1.0 C2 B:GOL1402 3.2 31.9 1.0 CE1 B:HIS315 3.2 15.9 1.0 CD2 B:HIS315 3.2 15.6 1.0 CE1 B:HIS333 3.3 18.2 1.0 OD1 B:ASP182 3.8 19.2 1.0 CG2 B:VAL337 4.1 13.2 1.0 K B:K1504 4.2 17.2 1.0 CB B:ASP232 4.2 12.4 1.0 CG B:HIS333 4.3 17.3 1.0 ND1 B:HIS315 4.3 15.6 1.0 CG B:HIS315 4.3 15.7 1.0 ND1 B:HIS333 4.4 17.9 1.0 C1 B:GOL1402 4.5 31.9 1.0 CG B:ASP182 4.5 19.6 1.0 OD2 B:ASP182 4.6 20.1 1.0 O B:HOH1749 4.7 54.8 1.0 CA B:ASP232 4.9 12.0 1.0

A.M.Mulichak, A.M.Mulichak. N/A N/A.