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Zinc in PDB 1t9h: The Crystal Structure of Yloq, A Circularly Permuted Gtpase.

Protein crystallography data

The structure of The Crystal Structure of Yloq, A Circularly Permuted Gtpase., PDB code: 1t9h was solved by V.M.Levdikov, E.V.Blagova, J.A.Brannigan, L.Cladiere, A.A.Antson, M.N.Isupov, S.J.Seror, A.J.Wilkinson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.50 / 1.60
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 47.970, 47.970, 279.890, 90.00, 90.00, 90.00
R / Rfree (%) 14.4 / 17.8

Other elements in 1t9h:

The structure of The Crystal Structure of Yloq, A Circularly Permuted Gtpase. also contains other interesting chemical elements:

Calcium (Ca) 4 atoms
Uranium (U) 8 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the The Crystal Structure of Yloq, A Circularly Permuted Gtpase. (pdb code 1t9h). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the The Crystal Structure of Yloq, A Circularly Permuted Gtpase., PDB code: 1t9h:

Zinc binding site 1 out of 1 in 1t9h

Go back to Zinc Binding Sites List in 1t9h
Zinc binding site 1 out of 1 in the The Crystal Structure of Yloq, A Circularly Permuted Gtpase.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Crystal Structure of Yloq, A Circularly Permuted Gtpase. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn411

b:21.9
occ:1.00
ND1 A:HIS259 2.1 20.6 1.0
SG A:CYS265 2.3 20.2 1.0
SG A:CYS252 2.3 20.1 1.0
SG A:CYS257 2.3 21.7 1.0
CE1 A:HIS259 3.0 18.8 1.0
CB A:CYS257 3.2 24.7 1.0
CG A:HIS259 3.2 18.4 1.0
CB A:CYS265 3.3 20.5 1.0
CB A:CYS252 3.4 22.7 1.0
CA A:HIS259 3.6 20.4 1.0
CA A:CYS265 3.7 20.4 1.0
CB A:HIS259 3.7 19.4 1.0
N A:HIS259 3.9 20.7 1.0
N A:ALA266 4.1 20.3 1.0
NE2 A:HIS259 4.2 17.1 1.0
C A:CYS265 4.2 19.2 1.0
CG2 A:VAL267 4.3 18.9 1.0
CD2 A:HIS259 4.3 18.9 1.0
CB A:VAL267 4.3 18.0 1.0
N A:VAL267 4.3 18.6 1.0
O A:HOH470 4.4 29.6 1.0
CA A:CYS257 4.5 24.6 1.0
C A:CYS257 4.5 23.5 1.0
CA A:CYS252 4.6 22.8 1.0
O A:CYS257 4.6 22.5 1.0
C A:LEU258 5.0 20.1 1.0
N A:CYS265 5.0 21.6 1.0
CA A:VAL267 5.0 18.2 1.0
N A:LEU258 5.0 22.3 1.0

Reference:

V.M.Levdikov, E.V.Blagova, J.A.Brannigan, L.Cladiere, A.A.Antson, M.N.Isupov, S.J.Seror, A.J.Wilkinson. The Crystal Structure of Yloq, A Circularly Permuted Gtpase Essential For Bacillus Subtilis Viability. J.Mol.Biol. V. 340 767 2004.
ISSN: ISSN 0022-2836
PubMed: 15223319
DOI: 10.1016/J.JMB.2004.05.029
Page generated: Mon Jan 25 16:13:48 2021

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