Atomistry » Zinc » PDB 1sxa-1tbf » 1szc
Atomistry »
  Zinc »
    PDB 1sxa-1tbf »
      1szc »

Zinc in PDB 1szc: Structural Basis For Nicotinamide Cleavage and Adp-Ribose Transfer By Nad+-Dependent SIR2 Histone/Protein Deacetylases

Protein crystallography data

The structure of Structural Basis For Nicotinamide Cleavage and Adp-Ribose Transfer By Nad+-Dependent SIR2 Histone/Protein Deacetylases, PDB code: 1szc was solved by K.Zhao, R.Harshaw, X.Chai, R.Marmorstein, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 26.89 / 1.75
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 105.267, 105.267, 66.609, 90.00, 90.00, 120.00
R / Rfree (%) 21 / 23.9

Other elements in 1szc:

The structure of Structural Basis For Nicotinamide Cleavage and Adp-Ribose Transfer By Nad+-Dependent SIR2 Histone/Protein Deacetylases also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Structural Basis For Nicotinamide Cleavage and Adp-Ribose Transfer By Nad+-Dependent SIR2 Histone/Protein Deacetylases (pdb code 1szc). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Structural Basis For Nicotinamide Cleavage and Adp-Ribose Transfer By Nad+-Dependent SIR2 Histone/Protein Deacetylases, PDB code: 1szc:

Zinc binding site 1 out of 1 in 1szc

Go back to Zinc Binding Sites List in 1szc
Zinc binding site 1 out of 1 in the Structural Basis For Nicotinamide Cleavage and Adp-Ribose Transfer By Nad+-Dependent SIR2 Histone/Protein Deacetylases


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structural Basis For Nicotinamide Cleavage and Adp-Ribose Transfer By Nad+-Dependent SIR2 Histone/Protein Deacetylases within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn701

b:30.2
occ:1.00
SG A:CYS146 2.2 32.1 1.0
SG A:CYS170 2.3 27.5 1.0
SG A:CYS173 2.3 25.4 1.0
SG A:CYS143 2.3 25.8 1.0
CB A:CYS170 3.1 24.6 1.0
CB A:CYS143 3.2 29.9 1.0
CB A:CYS146 3.2 35.9 1.0
N A:CYS146 3.4 34.8 1.0
CB A:CYS173 3.5 22.9 1.0
N A:CYS173 3.7 27.2 1.0
CA A:CYS146 3.8 33.9 1.0
CA A:CYS173 4.1 25.8 1.0
C A:GLY145 4.4 42.4 1.0
CB A:VAL172 4.5 28.1 1.0
N A:GLY147 4.5 36.6 1.0
C A:CYS146 4.5 39.8 1.0
CA A:CYS170 4.6 24.6 1.0
CA A:CYS143 4.6 29.0 1.0
C A:CYS173 4.7 29.3 1.0
N A:GLY174 4.7 24.7 1.0
CA A:GLY145 4.7 39.0 1.0
N A:LYS148 4.7 35.2 1.0
CB A:LYS148 4.8 31.9 1.0
C A:VAL172 4.8 29.0 1.0
N A:GLY145 4.8 35.5 1.0
CG1 A:VAL172 4.9 29.8 1.0
N A:GLU175 4.9 24.2 1.0

Reference:

K.Zhao, R.Harshaw, X.Chai, R.Marmorstein. Structural Basis For Nicotinamide Cleavage and Adp-Ribose Transfer By Nad(+)-Dependent SIR2 Histone/Protein Deacetylases. Proc.Natl.Acad.Sci.Usa V. 101 8563 2004.
ISSN: ISSN 0027-8424
PubMed: 15150415
DOI: 10.1073/PNAS.0401057101
Page generated: Mon Jan 25 16:13:37 2021

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy