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Zinc in PDB 1sos: Atomic Structures of Wild-Type and Thermostable Mutant Recombinant Human Cu, Zn Superoxide Dismutase

Enzymatic activity of Atomic Structures of Wild-Type and Thermostable Mutant Recombinant Human Cu, Zn Superoxide Dismutase

All present enzymatic activity of Atomic Structures of Wild-Type and Thermostable Mutant Recombinant Human Cu, Zn Superoxide Dismutase:
1.15.1.1;

Protein crystallography data

The structure of Atomic Structures of Wild-Type and Thermostable Mutant Recombinant Human Cu, Zn Superoxide Dismutase, PDB code: 1sos was solved by H.E.Parge, R.A.Hallewell, J.A.Tainer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) N/A / 2.50
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 205.200, 167.000, 145.500, 90.00, 90.00, 90.00
R / Rfree (%) 20.2 / n/a

Other elements in 1sos:

The structure of Atomic Structures of Wild-Type and Thermostable Mutant Recombinant Human Cu, Zn Superoxide Dismutase also contains other interesting chemical elements:

Copper (Cu) 10 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Atomic Structures of Wild-Type and Thermostable Mutant Recombinant Human Cu, Zn Superoxide Dismutase (pdb code 1sos). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 10 binding sites of Zinc where determined in the Atomic Structures of Wild-Type and Thermostable Mutant Recombinant Human Cu, Zn Superoxide Dismutase, PDB code: 1sos:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Zinc binding site 1 out of 10 in 1sos

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Zinc binding site 1 out of 10 in the Atomic Structures of Wild-Type and Thermostable Mutant Recombinant Human Cu, Zn Superoxide Dismutase


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Atomic Structures of Wild-Type and Thermostable Mutant Recombinant Human Cu, Zn Superoxide Dismutase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn155

b:6.9
occ:1.00
 OD1 A:ASP83 1.9 2.1 1.0
ND1 A:HIS80 2.0 2.8 1.0
ND1 A:HIS71 2.1 3.9 1.0
ND1 A:HIS63 2.1 12.0 1.0
CE1 A:HIS80 2.8 2.0 1.0
CE1 A:HIS71 2.8 2.9 1.0
CG A:HIS63 2.8 12.4 1.0
CG A:ASP83 2.9 5.1 1.0
OD2 A:ASP83 3.0 9.4 1.0
CE1 A:HIS63 3.1 14.0 1.0
CG A:HIS80 3.2 3.4 1.0
CG A:HIS71 3.2 5.0 1.0
CB A:HIS63 3.3 11.0 1.0
CB A:HIS80 3.7 4.7 1.0
O A:LYS136 3.8 14.7 1.0
CB A:HIS71 3.8 3.9 1.0
NE2 A:HIS80 4.0 2.0 1.0
CD2 A:HIS63 4.0 15.7 1.0
NE2 A:HIS71 4.0 3.5 1.0
CA A:HIS71 4.1 2.0 1.0
NE2 A:HIS63 4.1 21.1 1.0
CD2 A:HIS80 4.2 2.1 1.0
CD2 A:HIS71 4.2 6.8 1.0
CB A:ASP83 4.3 2.0 1.0
CA A:ASP83 4.7 2.0 1.0
C A:LYS136 4.8 13.4 1.0
CA A:HIS63 4.8 7.3 1.0
N A:GLY72 4.9 2.0 1.0
CA A:HIS80 4.9 6.0 1.0
N A:HIS80 4.9 6.5 1.0
N A:HIS71 4.9 2.0 1.0
N A:ASP83 5.0 3.8 1.0

Zinc binding site 2 out of 10 in 1sos

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Zinc binding site 2 out of 10 in the Atomic Structures of Wild-Type and Thermostable Mutant Recombinant Human Cu, Zn Superoxide Dismutase


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Atomic Structures of Wild-Type and Thermostable Mutant Recombinant Human Cu, Zn Superoxide Dismutase within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Zn155

b:2.0
occ:1.00
 OD1 F:ASP83 2.0 2.0 1.0
ND1 F:HIS71 2.0 2.0 1.0
ND1 F:HIS80 2.1 2.1 1.0
ND1 F:HIS63 2.1 3.6 1.0
CE1 F:HIS71 2.7 2.0 1.0
CE1 F:HIS80 2.8 2.0 1.0
CG F:ASP83 2.9 2.0 1.0
CG F:HIS63 2.9 4.6 1.0
CE1 F:HIS63 3.2 7.3 1.0
OD2 F:ASP83 3.2 3.5 1.0
CG F:HIS80 3.2 2.0 1.0
CG F:HIS71 3.2 4.8 1.0
CB F:HIS63 3.3 2.0 1.0
CB F:HIS80 3.8 2.0 1.0
CB F:HIS71 3.9 4.0 1.0
NE2 F:HIS80 4.0 2.0 1.0
NE2 F:HIS71 4.0 2.0 1.0
O F:LYS136 4.0 2.6 1.0
CD2 F:HIS63 4.1 6.6 1.0
CA F:HIS71 4.2 2.0 1.0
CD2 F:HIS80 4.2 2.0 1.0
NE2 F:HIS63 4.2 10.9 1.0
CB F:ASP83 4.3 2.0 1.0
CD2 F:HIS71 4.3 2.0 1.0
CA F:ASP83 4.8 2.0 1.0
CA F:HIS63 4.8 2.9 1.0
CD2 F:HIS46 4.9 2.3 1.0
N F:ASP83 4.9 2.0 1.0
N F:GLY72 5.0 2.0 1.0
C F:LYS136 5.0 3.1 1.0

Zinc binding site 3 out of 10 in 1sos

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Zinc binding site 3 out of 10 in the Atomic Structures of Wild-Type and Thermostable Mutant Recombinant Human Cu, Zn Superoxide Dismutase


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Atomic Structures of Wild-Type and Thermostable Mutant Recombinant Human Cu, Zn Superoxide Dismutase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn155

b:7.6
occ:1.00
 OD1 B:ASP83 2.0 2.0 1.0
ND1 B:HIS80 2.1 5.9 1.0
ND1 B:HIS71 2.1 6.2 1.0
ND1 B:HIS63 2.1 6.2 1.0
CE1 B:HIS80 2.7 9.1 1.0
CG B:ASP83 2.8 3.2 1.0
OD2 B:ASP83 2.9 4.7 1.0
CE1 B:HIS71 3.0 6.4 1.0
CG B:HIS63 3.0 2.2 1.0
CG B:HIS71 3.1 8.3 1.0
CG B:HIS80 3.1 9.0 1.0
CE1 B:HIS63 3.2 5.7 1.0
CB B:HIS63 3.4 4.2 1.0
CB B:HIS71 3.7 9.1 1.0
CB B:HIS80 3.8 10.6 1.0
NE2 B:HIS80 3.9 11.8 1.0
CA B:HIS71 4.0 12.3 1.0
O B:LYS136 4.1 23.5 1.0
NE2 B:HIS71 4.1 2.0 1.0
CD2 B:HIS80 4.1 9.6 1.0
CD2 B:HIS63 4.1 4.6 1.0
CD2 B:HIS71 4.2 5.3 1.0
CB B:ASP83 4.2 2.0 1.0
NE2 B:HIS63 4.3 9.0 1.0
CD2 B:HIS46 4.8 7.6 1.0
CA B:ASP83 4.8 3.8 1.0
N B:GLY72 4.9 7.8 1.0
CA B:THR137 4.9 16.4 1.0
C B:LYS136 4.9 20.9 1.0
N B:HIS71 4.9 12.6 1.0
CA B:HIS63 5.0 5.2 1.0
N B:HIS80 5.0 7.9 1.0
CA B:HIS80 5.0 8.9 1.0

Zinc binding site 4 out of 10 in 1sos

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Zinc binding site 4 out of 10 in the Atomic Structures of Wild-Type and Thermostable Mutant Recombinant Human Cu, Zn Superoxide Dismutase


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Atomic Structures of Wild-Type and Thermostable Mutant Recombinant Human Cu, Zn Superoxide Dismutase within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Zn155

b:2.0
occ:1.00
 OD1 G:ASP83 1.9 5.1 1.0
ND1 G:HIS80 2.1 4.6 1.0
ND1 G:HIS71 2.1 2.0 1.0
ND1 G:HIS63 2.1 2.0 1.0
CG G:ASP83 2.7 3.1 1.0
OD2 G:ASP83 2.7 7.2 1.0
CE1 G:HIS71 2.7 3.1 1.0
CE1 G:HIS80 2.7 2.0 1.0
CG G:HIS63 3.0 2.3 1.0
CE1 G:HIS63 3.1 2.0 1.0
CG G:HIS80 3.2 4.8 1.0
CG G:HIS71 3.2 2.0 1.0
CB G:HIS63 3.5 2.0 1.0
O G:LYS136 3.8 2.6 1.0
CB G:HIS80 3.9 2.0 1.0
CB G:HIS71 3.9 2.6 1.0
NE2 G:HIS80 3.9 2.0 1.0
NE2 G:HIS71 4.0 2.0 1.0
CA G:HIS71 4.0 2.0 1.0
CB G:ASP83 4.1 2.0 1.0
CD2 G:HIS63 4.1 2.0 1.0
NE2 G:HIS63 4.2 2.5 1.0
CD2 G:HIS80 4.2 2.0 1.0
CD2 G:HIS71 4.2 2.0 1.0
CA G:ASP83 4.7 2.0 1.0
C G:LYS136 4.8 2.0 1.0
N G:HIS71 4.8 2.0 1.0
N G:HIS80 4.9 2.0 1.0
N G:GLY72 4.9 2.0 1.0
CA G:THR137 5.0 2.0 1.0

Zinc binding site 5 out of 10 in 1sos

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Zinc binding site 5 out of 10 in the Atomic Structures of Wild-Type and Thermostable Mutant Recombinant Human Cu, Zn Superoxide Dismutase


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Atomic Structures of Wild-Type and Thermostable Mutant Recombinant Human Cu, Zn Superoxide Dismutase within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn155

b:10.4
occ:1.00
 OD1 C:ASP83 1.9 2.7 1.0
ND1 C:HIS80 2.0 2.0 1.0
ND1 C:HIS71 2.1 4.0 1.0
ND1 C:HIS63 2.1 10.0 1.0
CE1 C:HIS71 2.6 3.3 1.0
CE1 C:HIS80 2.8 2.1 1.0
CG C:HIS63 2.9 7.7 1.0
CG C:HIS80 3.1 2.8 1.0
CE1 C:HIS63 3.1 12.7 1.0
CG C:ASP83 3.1 2.2 1.0
CB C:HIS63 3.3 4.9 1.0
CG C:HIS71 3.3 5.4 1.0
O C:LYS136 3.7 13.1 1.0
CB C:HIS80 3.7 2.0 1.0
OD2 C:ASP83 3.7 4.7 1.0
NE2 C:HIS71 3.8 2.0 1.0
NE2 C:HIS80 3.9 2.1 1.0
CD2 C:HIS63 4.0 11.2 1.0
CB C:HIS71 4.1 4.7 1.0
CD2 C:HIS80 4.1 2.1 1.0
NE2 C:HIS63 4.2 12.7 1.0
CD2 C:HIS71 4.2 2.0 1.0
CA C:HIS71 4.3 4.2 1.0
CB C:ASP83 4.4 2.0 1.0
CA C:ASP83 4.8 2.0 1.0
CA C:HIS63 4.8 2.0 1.0
C C:LYS136 4.8 10.0 1.0
CA C:HIS80 4.9 3.4 1.0
N C:HIS80 4.9 3.7 1.0
O C:HOH193 5.0 5.0 1.0

Zinc binding site 6 out of 10 in 1sos

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Zinc binding site 6 out of 10 in the Atomic Structures of Wild-Type and Thermostable Mutant Recombinant Human Cu, Zn Superoxide Dismutase


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Atomic Structures of Wild-Type and Thermostable Mutant Recombinant Human Cu, Zn Superoxide Dismutase within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Zn155

b:4.8
occ:1.00
 OD1 H:ASP83 1.9 2.0 1.0
ND1 H:HIS71 2.1 2.0 1.0
ND1 H:HIS80 2.1 5.1 1.0
ND1 H:HIS63 2.1 4.6 1.0
CE1 H:HIS71 2.8 2.0 1.0
CE1 H:HIS80 2.8 2.5 1.0
CG H:ASP83 2.9 2.7 1.0
CG H:HIS63 2.9 2.0 1.0
CE1 H:HIS63 3.1 5.8 1.0
CG H:HIS71 3.2 2.8 1.0
OD2 H:ASP83 3.2 7.4 1.0
CG H:HIS80 3.2 5.4 1.0
CB H:HIS63 3.4 2.0 1.0
O H:LYS136 3.7 5.7 1.0
CB H:HIS71 3.8 3.1 1.0
CB H:HIS80 3.9 5.4 1.0
NE2 H:HIS71 4.0 2.0 1.0
NE2 H:HIS80 4.0 2.0 1.0
CD2 H:HIS63 4.0 3.1 1.0
CA H:HIS71 4.1 2.0 1.0
NE2 H:HIS63 4.1 4.3 1.0
CD2 H:HIS71 4.2 3.3 1.0
CD2 H:HIS80 4.2 2.0 1.0
CB H:ASP83 4.2 2.0 1.0
CA H:ASP83 4.7 2.0 1.0
C H:LYS136 4.8 4.4 1.0
CA H:HIS63 4.9 2.0 1.0
N H:ASP83 4.9 2.1 1.0
N H:HIS80 5.0 2.0 1.0
N H:GLY72 5.0 2.9 1.0
CA H:THR137 5.0 2.0 1.0
CA H:HIS80 5.0 4.7 1.0

Zinc binding site 7 out of 10 in 1sos

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Zinc binding site 7 out of 10 in the Atomic Structures of Wild-Type and Thermostable Mutant Recombinant Human Cu, Zn Superoxide Dismutase


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of Atomic Structures of Wild-Type and Thermostable Mutant Recombinant Human Cu, Zn Superoxide Dismutase within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn155

b:15.2
occ:1.00
 OD1 D:ASP83 2.0 6.2 1.0
ND1 D:HIS71 2.1 7.7 1.0
ND1 D:HIS80 2.1 12.9 1.0
ND1 D:HIS63 2.1 19.6 1.0
CG D:ASP83 2.8 7.9 1.0
CG D:HIS63 2.9 18.3 1.0
CE1 D:HIS80 2.9 13.9 1.0
OD2 D:ASP83 2.9 12.4 1.0
CE1 D:HIS71 2.9 8.6 1.0
CG D:HIS71 3.1 7.9 1.0
CE1 D:HIS63 3.2 21.0 1.0
CG D:HIS80 3.2 10.7 1.0
CB D:HIS63 3.2 13.3 1.0
CB D:HIS71 3.6 10.9 1.0
CB D:HIS80 3.8 11.5 1.0
O D:LYS136 3.9 27.3 1.0
CD2 D:HIS63 4.0 20.7 1.0
CA D:HIS71 4.1 12.5 1.0
NE2 D:HIS80 4.1 15.1 1.0
NE2 D:HIS71 4.1 6.5 1.0
NE2 D:HIS63 4.2 23.0 1.0
CB D:ASP83 4.2 5.7 1.0
CD2 D:HIS71 4.2 7.6 1.0
CD2 D:HIS80 4.2 11.9 1.0
CD2 D:HIS46 4.7 12.7 1.0
CA D:HIS63 4.7 10.0 1.0
CA D:ASP83 4.8 7.0 1.0
N D:GLY72 4.9 11.6 1.0
CA D:HIS80 4.9 11.6 1.0
N D:HIS80 5.0 14.4 1.0
CG D:HIS46 5.0 10.7 1.0
CA D:THR137 5.0 24.4 1.0
C D:HIS71 5.0 12.3 1.0

Zinc binding site 8 out of 10 in 1sos

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Zinc binding site 8 out of 10 in the Atomic Structures of Wild-Type and Thermostable Mutant Recombinant Human Cu, Zn Superoxide Dismutase


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 8 of Atomic Structures of Wild-Type and Thermostable Mutant Recombinant Human Cu, Zn Superoxide Dismutase within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Zn155

b:3.8
occ:1.00
 OD1 I:ASP83 1.9 2.0 1.0
ND1 I:HIS80 2.0 2.0 1.0
ND1 I:HIS71 2.1 2.0 1.0
ND1 I:HIS63 2.1 8.1 1.0
CE1 I:HIS80 2.5 2.0 1.0
CG I:ASP83 2.7 2.0 1.0
OD2 I:ASP83 2.8 4.6 1.0
CG I:HIS63 3.0 6.2 1.0
CE1 I:HIS71 3.0 2.0 1.0
CG I:HIS71 3.0 4.1 1.0
CE1 I:HIS63 3.1 9.9 1.0
CG I:HIS80 3.3 2.6 1.0
CB I:HIS63 3.4 6.9 1.0
CB I:HIS71 3.5 3.3 1.0
NE2 I:HIS80 3.7 2.0 1.0
O I:LYS136 3.8 7.7 1.0
CA I:HIS71 3.9 4.4 1.0
CB I:HIS80 4.0 2.5 1.0
NE2 I:HIS71 4.1 2.0 1.0
CD2 I:HIS63 4.1 12.2 1.0
CD2 I:HIS80 4.1 3.5 1.0
CB I:ASP83 4.2 2.0 1.0
CD2 I:HIS71 4.2 2.0 1.0
NE2 I:HIS63 4.2 13.4 1.0
CA I:ASP83 4.8 2.0 1.0
C I:LYS136 4.9 7.1 1.0
N I:HIS71 4.9 7.2 1.0
CA I:HIS63 4.9 7.4 1.0
N I:GLY72 4.9 2.0 1.0
N I:ASP83 5.0 3.5 1.0
C I:HIS71 5.0 3.2 1.0

Zinc binding site 9 out of 10 in 1sos

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Zinc binding site 9 out of 10 in the Atomic Structures of Wild-Type and Thermostable Mutant Recombinant Human Cu, Zn Superoxide Dismutase


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 9 of Atomic Structures of Wild-Type and Thermostable Mutant Recombinant Human Cu, Zn Superoxide Dismutase within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Zn155

b:15.6
occ:1.00
 OD1 E:ASP83 2.0 18.0 1.0
ND1 E:HIS80 2.1 14.9 1.0
ND1 E:HIS71 2.1 25.1 1.0
ND1 E:HIS63 2.1 21.2 1.0
OD2 E:ASP83 2.5 24.2 1.0
CG E:ASP83 2.5 20.3 1.0
CE1 E:HIS71 2.7 27.0 1.0
CE1 E:HIS80 2.8 12.2 1.0
CG E:HIS63 3.0 20.5 1.0
CG E:HIS71 3.2 26.7 1.0
CE1 E:HIS63 3.2 22.9 1.0
CG E:HIS80 3.2 15.1 1.0
CB E:HIS63 3.4 17.9 1.0
O E:LYS136 3.5 34.8 1.0
CB E:HIS71 3.9 27.6 1.0
CB E:HIS80 3.9 18.2 1.0
NE2 E:HIS71 3.9 25.2 1.0
NE2 E:HIS80 4.0 12.7 1.0
CB E:ASP83 4.0 18.6 1.0
CD2 E:HIS71 4.1 26.2 1.0
CD2 E:HIS63 4.2 22.3 1.0
CD2 E:HIS80 4.2 13.4 1.0
NE2 E:HIS63 4.3 25.7 1.0
CA E:HIS71 4.4 28.9 1.0
CD2 E:HIS46 4.7 13.0 1.0
C E:LYS136 4.7 36.1 1.0
CA E:ASP83 4.7 18.8 1.0
O E:THR137 4.8 36.4 1.0
CA E:HIS63 4.9 19.7 1.0

Zinc binding site 10 out of 10 in 1sos

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Zinc binding site 10 out of 10 in the Atomic Structures of Wild-Type and Thermostable Mutant Recombinant Human Cu, Zn Superoxide Dismutase


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 10 of Atomic Structures of Wild-Type and Thermostable Mutant Recombinant Human Cu, Zn Superoxide Dismutase within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Zn155

b:8.3
occ:1.00
 OD1 J:ASP83 1.9 10.6 1.0
ND1 J:HIS80 2.1 5.7 1.0
ND1 J:HIS71 2.1 3.9 1.0
ND1 J:HIS63 2.1 6.0 1.0
CE1 J:HIS71 2.7 4.0 1.0
CG J:ASP83 2.8 10.2 1.0
CE1 J:HIS80 2.9 2.7 1.0
CE1 J:HIS63 3.0 8.7 1.0
CG J:HIS63 3.0 4.4 1.0
OD2 J:ASP83 3.0 14.6 1.0
CG J:HIS80 3.1 7.1 1.0
CG J:HIS71 3.3 5.5 1.0
CB J:HIS63 3.5 4.1 1.0
CB J:HIS80 3.6 6.6 1.0
O J:LYS136 3.7 8.3 1.0
NE2 J:HIS71 3.9 2.6 1.0
CB J:HIS71 3.9 5.7 1.0
NE2 J:HIS63 4.1 12.8 1.0
CD2 J:HIS63 4.1 8.2 1.0
NE2 J:HIS80 4.1 2.0 1.0
CB J:ASP83 4.2 10.7 1.0
CD2 J:HIS80 4.2 3.4 1.0
CD2 J:HIS71 4.3 2.2 1.0
CA J:HIS71 4.4 5.6 1.0
CA J:ASP83 4.7 12.4 1.0
CA J:HIS80 4.8 9.5 1.0
N J:HIS80 4.8 8.1 1.0
C J:LYS136 4.8 6.9 1.0
O J:HOH194 4.8 9.8 1.0
CD2 J:HIS46 4.9 2.0 1.0
N J:ASP83 5.0 14.2 1.0
CA J:HIS63 5.0 4.3 1.0

Reference:

H.E.Parge, R.A.Hallewell, J.A.Tainer. Atomic Structures of Wild-Type and Thermostable Mutant Recombinant Human Cu,Zn Superoxide Dismutase. Proc.Natl.Acad.Sci.Usa V. 89 6109 1992.
ISSN: ISSN 0027-8424
PubMed: 1463506
DOI: 10.1073/PNAS.89.13.6109
Page generated: Wed Oct 16 18:53:09 2024

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