Atomistry » Zinc » PDB 1sdx-1sx1 » 1shw
Atomistry »
  Zinc »
    PDB 1sdx-1sx1 »
      1shw »

Zinc in PDB 1shw: EPHB2 / EPHRINA5 Complex Structure

Protein crystallography data

The structure of EPHB2 / EPHRINA5 Complex Structure, PDB code: 1shw was solved by J.P.Himanen, M.J.Chumley, M.Lackmann, C.Li, W.A.Barton, P.D.Jeffrey, C.Vearing, D.Geleick, D.A.Feldheim, A.W.Boyd, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 8.00 / 2.20
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 37.890, 88.970, 122.810, 90.00, 90.00, 90.00
R / Rfree (%) 25.8 / 30.5

Zinc Binding Sites:

The binding sites of Zinc atom in the EPHB2 / EPHRINA5 Complex Structure (pdb code 1shw). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the EPHB2 / EPHRINA5 Complex Structure, PDB code: 1shw:

Zinc binding site 1 out of 1 in 1shw

Go back to Zinc Binding Sites List in 1shw
Zinc binding site 1 out of 1 in the EPHB2 / EPHRINA5 Complex Structure


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of EPHB2 / EPHRINA5 Complex Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1001

b:38.4
occ:1.00
OD2 A:ASP55 2.1 28.5 1.0
NE2 A:HIS53 2.3 36.3 1.0
OD1 A:ASP55 2.4 29.7 1.0
CG A:ASP55 2.6 23.0 1.0
O A:HOH1036 2.9 32.7 1.0
CD2 A:HIS53 3.2 30.4 1.0
CE1 A:HIS53 3.4 34.6 1.0
CB A:ASP55 4.1 25.3 1.0
O A:HOH1091 4.3 60.4 1.0
CG A:HIS53 4.4 37.3 1.0
ND1 A:HIS53 4.4 35.9 1.0
CD2 A:PHE162 4.7 31.4 1.0
CA A:ASP55 4.9 24.4 1.0
N A:ASP55 5.0 22.5 1.0

Reference:

J.P.Himanen, M.J.Chumley, M.Lackmann, C.Li, W.A.Barton, P.D.Jeffrey, C.Vearing, D.Geleick, D.A.Feldheim, A.W.Boyd, M.Henkemeyer, D.B.Nikolov. Repelling Class Discrimination: Ephrin-A5 Binds to and Activates EPHB2 Receptor Signaling Nat.Neurosci. V. 7 501 2004.
ISSN: ISSN 1097-6256
PubMed: 15107857
DOI: 10.1038/NN1237
Page generated: Wed Dec 16 03:03:39 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy