Zinc in PDB 1shw: EPHB2 / EPHRINA5 Complex Structure

The structure of EPHB2 / EPHRINA5 Complex Structure, PDB code: 1shw was solved by J.P.Himanen, M.J.Chumley, M.Lackmann, C.Li, W.A.Barton, P.D.Jeffrey, C.Vearing, D.Geleick, D.A.Feldheim, A.W.Boyd, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	8.00 / 2.20
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	37.890, 88.970, 122.810, 90.00, 90.00, 90.00
R / Rfree (%)	25.8 / 30.5

The binding sites of Zinc atom in the EPHB2 / EPHRINA5 Complex Structure (pdb code 1shw). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the EPHB2 / EPHRINA5 Complex Structure, PDB code: 1shw:

Zinc binding site 1 out of 1 in the EPHB2 / EPHRINA5 Complex Structure


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of EPHB2 / EPHRINA5 Complex Structure within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1001 b:38.4 occ:1.00 OD2 A:ASP55 2.1 28.5 1.0 NE2 A:HIS53 2.3 36.3 1.0 OD1 A:ASP55 2.4 29.7 1.0 CG A:ASP55 2.6 23.0 1.0 O A:HOH1036 2.9 32.7 1.0 CD2 A:HIS53 3.2 30.4 1.0 CE1 A:HIS53 3.4 34.6 1.0 CB A:ASP55 4.1 25.3 1.0 O A:HOH1091 4.3 60.4 1.0 CG A:HIS53 4.4 37.3 1.0 ND1 A:HIS53 4.4 35.9 1.0 CD2 A:PHE162 4.7 31.4 1.0 CA A:ASP55 4.9 24.4 1.0 N A:ASP55 5.0 22.5 1.0

J.P.Himanen, M.J.Chumley, M.Lackmann, C.Li, W.A.Barton, P.D.Jeffrey, C.Vearing, D.Geleick, D.A.Feldheim, A.W.Boyd, M.Henkemeyer, D.B.Nikolov. Repelling Class Discrimination: Ephrin-A5 Binds to and Activates EPHB2 Receptor Signaling Nat.Neurosci. V. 7 501 2004.
ISSN: ISSN 1097-6256
PubMed: 15107857
DOI: 10.1038/NN1237