Zinc in PDB 1s03: The Structure of A Ribosomal Protein S8/Spc Operon Mrna Complex

The structure of The Structure of A Ribosomal Protein S8/Spc Operon Mrna Complex, PDB code: 1s03 was solved by H.J.Merianos, J.Wang, P.B.Moore, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 2.70
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	61.220, 61.220, 332.520, 90.00, 90.00, 120.00
R / Rfree (%)	23.7 / 27.3

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 17;

Binding sites:

The binding sites of Zinc atom in the The Structure of A Ribosomal Protein S8/Spc Operon Mrna Complex (pdb code 1s03). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 17 binding sites of Zinc where determined in the The Structure of A Ribosomal Protein S8/Spc Operon Mrna Complex, PDB code: 1s03:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Zinc binding site 1 out of 17 in the The Structure of A Ribosomal Protein S8/Spc Operon Mrna Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Structure of A Ribosomal Protein S8/Spc Operon Mrna Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn48 b:65.0 occ:1.00 O4 A:U32 4.3 21.1 1.0 O6 A:G33 4.4 29.9 1.0 OP2 A:C15 4.5 34.5 1.0 N7 A:G33 4.8 24.6 1.0 C5 A:U32 4.8 26.2 1.0 C4 A:U32 4.9 28.9 1.0 N4 A:C34 5.0 19.5 1.0

Zinc binding site 2 out of 17 in the The Structure of A Ribosomal Protein S8/Spc Operon Mrna Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of The Structure of A Ribosomal Protein S8/Spc Operon Mrna Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn49 b:81.3 occ:1.00 O6 A:G21 4.0 22.8 1.0 O4 A:U20 4.1 27.1 1.0 N7 A:G21 4.5 26.6 1.0 C5 A:U20 4.7 21.8 1.0 C4 A:U20 4.7 26.7 1.0 C6 A:G21 4.9 25.5 1.0

Zinc binding site 3 out of 17 in the The Structure of A Ribosomal Protein S8/Spc Operon Mrna Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of The Structure of A Ribosomal Protein S8/Spc Operon Mrna Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn50 b:95.4 occ:1.00 N7 A:A13 4.1 24.2 1.0 OP2 A:A12 4.3 34.1 1.0 N7 A:A35 4.4 28.1 1.0 OP2 A:C34 4.4 15.4 1.0 C8 A:A13 4.6 26.7 1.0 N6 A:A35 4.7 24.2 1.0 OP2 A:A13 4.9 30.8 1.0

Zinc binding site 4 out of 17 in the The Structure of A Ribosomal Protein S8/Spc Operon Mrna Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of The Structure of A Ribosomal Protein S8/Spc Operon Mrna Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn51 b:0.1 occ:1.00 OP2 A:U16 4.1 17.6 1.0 OP2 A:C30 4.3 29.7 1.0

Zinc binding site 5 out of 17 in the The Structure of A Ribosomal Protein S8/Spc Operon Mrna Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of The Structure of A Ribosomal Protein S8/Spc Operon Mrna Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn52 b:0.1 occ:1.00 N7 A:G8 2.4 53.0 1.0 C8 A:G8 3.1 60.2 1.0 C5 A:G8 3.5 59.4 1.0 O6 A:G8 4.0 63.0 1.0 C6 A:G8 4.2 60.2 1.0 N9 A:G8 4.4 64.9 1.0 N7 A:A6 4.6 0.2 1.0 C4 A:G8 4.6 60.9 1.0 N6 A:A6 4.6 0.1 1.0

Zinc binding site 6 out of 17 in the The Structure of A Ribosomal Protein S8/Spc Operon Mrna Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of The Structure of A Ribosomal Protein S8/Spc Operon Mrna Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn53 b:0.7 occ:1.00 N7 A:G2 2.1 73.4 1.0 O6 A:G2 2.8 74.2 1.0 C5 A:G2 2.8 74.3 1.0 C6 A:G2 3.1 73.1 1.0 C8 A:G2 3.2 80.2 1.0 OP2 A:G2 3.8 81.6 1.0 C4 A:G2 4.1 76.5 1.0 N7 A:G1 4.2 47.8 1.0 N9 A:G2 4.3 81.7 1.0 N1 A:G2 4.5 69.3 1.0 N6 A:A3 4.5 85.6 1.0 C5 A:G1 4.6 50.1 1.0 C8 A:G1 4.7 51.4 1.0 N7 A:A3 4.8 87.4 1.0 ZN A:ZN55 4.8 96.9 1.0 OP2 A:G1 4.8 47.9 1.0 O6 A:G1 4.9 48.4 1.0 C6 A:G1 4.9 50.9 1.0

Zinc binding site 7 out of 17 in the The Structure of A Ribosomal Protein S8/Spc Operon Mrna Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of The Structure of A Ribosomal Protein S8/Spc Operon Mrna Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn54 b:0.3 occ:1.00 OP1 A:G1 2.5 61.8 1.0 P A:G1 3.9 61.0 1.0 CB H:ASP89 4.0 35.6 1.0 OD2 H:ASP89 4.0 51.5 1.0 CG H:ASP89 4.4 45.5 1.0 OP2 A:G1 4.5 47.9 1.0 OP3 A:G1 4.5 55.5 1.0 C5' A:G1 4.8 55.9 1.0 O5' A:G1 4.8 58.2 1.0

Zinc binding site 8 out of 17 in the The Structure of A Ribosomal Protein S8/Spc Operon Mrna Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 8 of The Structure of A Ribosomal Protein S8/Spc Operon Mrna Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn55 b:96.9 occ:1.00 N7 A:G1 2.3 47.8 1.0 C8 A:G1 2.9 51.4 1.0 OP2 A:G1 3.3 47.9 1.0 O A:HOH57 3.4 70.1 1.0 C5 A:G1 3.6 50.1 1.0 O6 A:G1 4.2 48.4 1.0 N9 A:G1 4.3 54.2 1.0 O5' A:G1 4.3 58.2 1.0 P A:G1 4.3 61.0 1.0 C6 A:G1 4.3 50.9 1.0 C4 A:G1 4.6 52.8 1.0 ZN A:ZN53 4.8 0.7 1.0 OP3 A:G1 4.9 55.5 1.0

Zinc binding site 9 out of 17 in the The Structure of A Ribosomal Protein S8/Spc Operon Mrna Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 9 of The Structure of A Ribosomal Protein S8/Spc Operon Mrna Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn48 b:85.0 occ:1.00 O6 B:G33 4.1 30.4 1.0 O4 B:U32 4.2 20.5 1.0 OP2 B:C15 4.7 35.0 1.0 C4 B:U32 4.8 28.1 1.0 C5 B:U32 4.8 25.7 1.0 N7 B:G33 4.8 24.4 1.0 N4 B:C34 4.9 18.1 1.0

Zinc binding site 10 out of 17 in the The Structure of A Ribosomal Protein S8/Spc Operon Mrna Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 10 of The Structure of A Ribosomal Protein S8/Spc Operon Mrna Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn49 b:85.6 occ:1.00 O4 B:U20 4.2 27.1 1.0 O6 B:G21 4.4 23.4 1.0 C5 B:U20 4.5 21.5 1.0 N7 B:G21 4.7 26.4 1.0 C4 B:U20 4.7 26.3 1.0

H.J.Merianos, J.Wang, P.B.Moore. The Structure of A Ribosomal Protein S8/Spc Operon Mrna Complex. Rna V. 10 954 2004.
ISSN: ISSN 1355-8382
PubMed: 15146079
DOI: 10.1261/RNA.7030704