Zinc in PDB 1rly: Rdc-Derived Models of the Zinc Ribbon Domain of Human General Transcription Tfiib (Zinc Bound Structures)

The binding sites of Zinc atom in the Rdc-Derived Models of the Zinc Ribbon Domain of Human General Transcription Tfiib (Zinc Bound Structures) (pdb code 1rly). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Rdc-Derived Models of the Zinc Ribbon Domain of Human General Transcription Tfiib (Zinc Bound Structures), PDB code: 1rly:

Zinc binding site 1 out of 1 in the Rdc-Derived Models of the Zinc Ribbon Domain of Human General Transcription Tfiib (Zinc Bound Structures)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Rdc-Derived Models of the Zinc Ribbon Domain of Human General Transcription Tfiib (Zinc Bound Structures) within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn61 b:0.0 occ:1.00 HE1 A:HIS18 0.5 0.0 1.0 CE1 A:HIS18 0.9 0.0 1.0 NE2 A:HIS18 1.9 0.0 1.0 ND1 A:HIS18 2.0 0.0 1.0 HE2 A:HIS18 2.3 0.0 1.0 SG A:CYS37 2.3 0.0 1.0 SG A:CYS15 2.3 0.0 1.0 H A:CYS37 2.3 0.0 1.0 SG A:CYS34 2.3 0.0 1.0 CD2 A:HIS18 2.9 0.0 1.0 CG A:HIS18 2.9 0.0 1.0 N A:CYS37 3.0 0.0 1.0 HB3 A:CYS34 3.1 0.0 1.0 HB2 A:GLU36 3.1 0.0 1.0 HB3 A:CYS15 3.2 0.0 1.0 HB3 A:ASN17 3.3 0.0 1.0 CB A:CYS37 3.3 0.0 1.0 CB A:CYS34 3.3 0.0 1.0 CB A:CYS15 3.4 0.0 1.0 HB3 A:CYS37 3.4 0.0 1.0 HD22 A:LEU39 3.5 0.0 1.0 HB2 A:ASN17 3.6 0.0 1.0 H A:HIS18 3.6 0.0 1.0 CA A:CYS37 3.7 0.0 1.0 H A:GLU36 3.8 0.0 1.0 HB2 A:CYS15 3.8 0.0 1.0 HB2 A:CYS34 3.8 0.0 1.0 H A:GLY38 3.9 0.0 1.0 CB A:ASN17 3.9 0.0 1.0 HD2 A:HIS18 3.9 0.0 1.0 CB A:GLU36 3.9 0.0 1.0 HB3 A:GLU36 4.0 0.0 1.0 H A:ASN17 4.0 0.0 1.0 C A:GLU36 4.0 0.0 1.0 N A:HIS18 4.1 0.0 1.0 HD23 A:LEU39 4.1 0.0 1.0 HB2 A:CYS37 4.2 0.0 1.0 CA A:GLU36 4.3 0.0 1.0 CB A:HIS18 4.3 0.0 1.0 CD2 A:LEU39 4.3 0.0 1.0 HB2 A:ALA21 4.4 0.0 1.0 N A:GLU36 4.4 0.0 1.0 H A:LEU39 4.4 0.0 1.0 HD2 A:PRO16 4.5 0.0 1.0 O A:CYS34 4.5 0.0 1.0 HA A:CYS37 4.5 0.0 1.0 N A:GLY38 4.5 0.0 1.0 CA A:CYS34 4.5 0.0 1.0 C A:CYS37 4.5 0.0 1.0 HB3 A:LEU39 4.6 0.0 1.0 HD12 A:LEU23 4.6 0.0 1.0 CA A:ASN17 4.7 0.0 1.0 C A:ASN17 4.7 0.0 1.0 C A:CYS34 4.7 0.0 1.0 N A:ASN17 4.7 0.0 1.0 CA A:CYS15 4.7 0.0 1.0 CA A:HIS18 4.8 0.0 1.0 HB2 A:HIS18 4.8 0.0 1.0 HA A:CYS15 4.8 0.0 1.0 HD13 A:LEU23 4.9 0.0 1.0 HB3 A:HIS18 4.9 0.0 1.0 HD21 A:ASN17 4.9 0.0 1.0 HD21 A:LEU39 5.0 0.0 1.0 HA A:CYS34 5.0 0.0 1.0

M.Ghosh, L.M.Elsby, T.K.Mal, J.M.Gooding, S.G.Roberts, M.Ikura. Probing ZN2+-Binding Effects on the Zinc-Ribbon Domain of Human General Transcription Factor Tfiib. Biochem.J. V. 378 317 2004.
ISSN: ISSN 0264-6021
PubMed: 14641108
DOI: 10.1042/BJ20031706