Atomistry » Zinc » PDB 1rae-1rpj » 1rly
Atomistry »
  Zinc »
    PDB 1rae-1rpj »
      1rly »

Zinc in PDB 1rly: Rdc-Derived Models of the Zinc Ribbon Domain of Human General Transcription Tfiib (Zinc Bound Structures)

Zinc Binding Sites:

The binding sites of Zinc atom in the Rdc-Derived Models of the Zinc Ribbon Domain of Human General Transcription Tfiib (Zinc Bound Structures) (pdb code 1rly). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Rdc-Derived Models of the Zinc Ribbon Domain of Human General Transcription Tfiib (Zinc Bound Structures), PDB code: 1rly:

Zinc binding site 1 out of 1 in 1rly

Go back to Zinc Binding Sites List in 1rly
Zinc binding site 1 out of 1 in the Rdc-Derived Models of the Zinc Ribbon Domain of Human General Transcription Tfiib (Zinc Bound Structures)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Rdc-Derived Models of the Zinc Ribbon Domain of Human General Transcription Tfiib (Zinc Bound Structures) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn61

b:0.0
occ:1.00
HE1 A:HIS18 0.5 0.0 1.0
CE1 A:HIS18 0.9 0.0 1.0
NE2 A:HIS18 1.9 0.0 1.0
ND1 A:HIS18 2.0 0.0 1.0
HE2 A:HIS18 2.3 0.0 1.0
SG A:CYS37 2.3 0.0 1.0
SG A:CYS15 2.3 0.0 1.0
H A:CYS37 2.3 0.0 1.0
SG A:CYS34 2.3 0.0 1.0
CD2 A:HIS18 2.9 0.0 1.0
CG A:HIS18 2.9 0.0 1.0
N A:CYS37 3.0 0.0 1.0
HB3 A:CYS34 3.1 0.0 1.0
HB2 A:GLU36 3.1 0.0 1.0
HB3 A:CYS15 3.2 0.0 1.0
HB3 A:ASN17 3.3 0.0 1.0
CB A:CYS37 3.3 0.0 1.0
CB A:CYS34 3.3 0.0 1.0
CB A:CYS15 3.4 0.0 1.0
HB3 A:CYS37 3.4 0.0 1.0
HD22 A:LEU39 3.5 0.0 1.0
HB2 A:ASN17 3.6 0.0 1.0
H A:HIS18 3.6 0.0 1.0
CA A:CYS37 3.7 0.0 1.0
H A:GLU36 3.8 0.0 1.0
HB2 A:CYS15 3.8 0.0 1.0
HB2 A:CYS34 3.8 0.0 1.0
H A:GLY38 3.9 0.0 1.0
CB A:ASN17 3.9 0.0 1.0
HD2 A:HIS18 3.9 0.0 1.0
CB A:GLU36 3.9 0.0 1.0
HB3 A:GLU36 4.0 0.0 1.0
H A:ASN17 4.0 0.0 1.0
C A:GLU36 4.0 0.0 1.0
N A:HIS18 4.1 0.0 1.0
HD23 A:LEU39 4.1 0.0 1.0
HB2 A:CYS37 4.2 0.0 1.0
CA A:GLU36 4.3 0.0 1.0
CB A:HIS18 4.3 0.0 1.0
CD2 A:LEU39 4.3 0.0 1.0
HB2 A:ALA21 4.4 0.0 1.0
N A:GLU36 4.4 0.0 1.0
H A:LEU39 4.4 0.0 1.0
HD2 A:PRO16 4.5 0.0 1.0
O A:CYS34 4.5 0.0 1.0
HA A:CYS37 4.5 0.0 1.0
N A:GLY38 4.5 0.0 1.0
CA A:CYS34 4.5 0.0 1.0
C A:CYS37 4.5 0.0 1.0
HB3 A:LEU39 4.6 0.0 1.0
HD12 A:LEU23 4.6 0.0 1.0
CA A:ASN17 4.7 0.0 1.0
C A:ASN17 4.7 0.0 1.0
C A:CYS34 4.7 0.0 1.0
N A:ASN17 4.7 0.0 1.0
CA A:CYS15 4.7 0.0 1.0
CA A:HIS18 4.8 0.0 1.0
HB2 A:HIS18 4.8 0.0 1.0
HA A:CYS15 4.8 0.0 1.0
HD13 A:LEU23 4.9 0.0 1.0
HB3 A:HIS18 4.9 0.0 1.0
HD21 A:ASN17 4.9 0.0 1.0
HD21 A:LEU39 5.0 0.0 1.0
HA A:CYS34 5.0 0.0 1.0

Reference:

M.Ghosh, L.M.Elsby, T.K.Mal, J.M.Gooding, S.G.Roberts, M.Ikura. Probing ZN2+-Binding Effects on the Zinc-Ribbon Domain of Human General Transcription Factor Tfiib. Biochem.J. V. 378 317 2004.
ISSN: ISSN 0264-6021
PubMed: 14641108
DOI: 10.1042/BJ20031706
Page generated: Mon Jan 25 16:12:44 2021

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy