Atomistry » Zinc » PDB 1pv8-1q5w » 1q3y
Atomistry »
  Zinc »
    PDB 1pv8-1q5w »
      1q3y »

Zinc in PDB 1q3y: uc(Nmr) Structure of the CYS28HIS Mutant (D Form) of the Nucleocapsid Protein NCP7 of Hiv-1.

Zinc Binding Sites:

The binding sites of Zinc atom in the uc(Nmr) Structure of the CYS28HIS Mutant (D Form) of the Nucleocapsid Protein NCP7 of Hiv-1. (pdb code 1q3y). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the uc(Nmr) Structure of the CYS28HIS Mutant (D Form) of the Nucleocapsid Protein NCP7 of Hiv-1., PDB code: 1q3y:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 1q3y

Go back to Zinc Binding Sites List in 1q3y
Zinc binding site 1 out of 2 in the uc(Nmr) Structure of the CYS28HIS Mutant (D Form) of the Nucleocapsid Protein NCP7 of Hiv-1.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of uc(Nmr) Structure of the CYS28HIS Mutant (D Form) of the Nucleocapsid Protein NCP7 of Hiv-1. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1

b:0.0
occ:1.00
HB3 A:CYS18 2.1 0.0 1.0
HE1 A:HIS28 2.1 0.0 1.0
ND1 A:HIS23 2.2 0.0 1.0
ND1 A:HIS28 2.3 0.0 1.0
HH22 A:ARG29 2.3 0.0 1.0
CB A:CYS18 2.5 0.0 1.0
CE1 A:HIS28 2.5 0.0 1.0
SG A:CYS18 2.6 0.0 1.0
HB2 A:CYS18 2.6 0.0 1.0
SG A:CYS15 2.8 0.0 1.0
CE1 A:HIS23 3.1 0.0 1.0
NH2 A:ARG29 3.1 0.0 1.0
HE1 A:HIS23 3.2 0.0 1.0
HH21 A:ARG29 3.2 0.0 1.0
CG A:HIS23 3.3 0.0 1.0
HZ1 A:LYS20 3.4 0.0 1.0
HA A:HIS28 3.6 0.0 1.0
HB2 A:HIS23 3.6 0.0 1.0
CG A:HIS28 3.7 0.0 1.0
HB2 A:LYS20 3.7 0.0 1.0
HB3 A:HIS23 3.7 0.0 1.0
CB A:HIS23 3.8 0.0 1.0
NE2 A:HIS28 3.8 0.0 1.0
CA A:CYS18 4.0 0.0 1.0
H A:GLY19 4.0 0.0 1.0
O A:ASN27 4.1 0.0 1.0
HH12 A:ARG29 4.2 0.0 1.0
HB3 A:LYS20 4.3 0.0 1.0
NE2 A:HIS23 4.3 0.0 1.0
CZ A:ARG29 4.3 0.0 1.0
HE3 A:LYS20 4.3 0.0 1.0
CD2 A:HIS28 4.4 0.0 1.0
HD2 A:LYS20 4.4 0.0 1.0
CA A:HIS28 4.4 0.0 1.0
CD2 A:HIS23 4.4 0.0 1.0
NZ A:LYS20 4.4 0.0 1.0
O A:ASN17 4.4 0.0 1.0
CB A:CYS15 4.4 0.0 1.0
HE2 A:HIS28 4.5 0.0 1.0
N A:CYS18 4.5 0.0 1.0
CB A:LYS20 4.5 0.0 1.0
CB A:HIS28 4.5 0.0 1.0
N A:GLY19 4.5 0.0 1.0
HA A:CYS18 4.6 0.0 1.0
C A:CYS18 4.6 0.0 1.0
HB2 A:CYS15 4.6 0.0 1.0
C A:ASN27 4.7 0.0 1.0
C A:ASN17 4.7 0.0 1.0
NH1 A:ARG29 4.7 0.0 1.0
HB3 A:HIS28 4.7 0.0 1.0
HB3 A:ASN27 4.8 0.0 1.0
CE A:LYS20 4.8 0.0 1.0
N A:HIS28 4.8 0.0 1.0
HA A:CYS15 4.9 0.0 1.0
HZ2 A:LYS20 4.9 0.0 1.0
H A:LYS20 5.0 0.0 1.0
HZ3 A:LYS20 5.0 0.0 1.0

Zinc binding site 2 out of 2 in 1q3y

Go back to Zinc Binding Sites List in 1q3y
Zinc binding site 2 out of 2 in the uc(Nmr) Structure of the CYS28HIS Mutant (D Form) of the Nucleocapsid Protein NCP7 of Hiv-1.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of uc(Nmr) Structure of the CYS28HIS Mutant (D Form) of the Nucleocapsid Protein NCP7 of Hiv-1. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn2

b:0.0
occ:1.00
HB3 A:CYS39 2.1 0.0 1.0
HB2 A:CYS36 2.3 0.0 1.0
NE2 A:HIS44 2.4 0.0 1.0
SG A:CYS49 2.6 0.0 1.0
SG A:CYS39 2.6 0.0 1.0
HB2 A:CYS49 2.7 0.0 1.0
CB A:CYS39 2.7 0.0 1.0
SG A:CYS36 2.7 0.0 1.0
CB A:CYS36 2.8 0.0 1.0
HB3 A:CYS36 2.9 0.0 1.0
CB A:CYS49 3.0 0.0 1.0
HB2 A:CYS39 3.1 0.0 1.0
CD2 A:HIS44 3.3 0.0 1.0
HB3 A:CYS49 3.4 0.0 1.0
CE1 A:HIS44 3.4 0.0 1.0
HB3 A:LYS41 3.4 0.0 1.0
HD2 A:HIS44 3.4 0.0 1.0
HE1 A:HIS44 3.6 0.0 1.0
H A:CYS39 3.8 0.0 1.0
CA A:CYS39 4.0 0.0 1.0
H A:GLY40 4.2 0.0 1.0
CA A:CYS36 4.2 0.0 1.0
N A:CYS39 4.3 0.0 1.0
H A:CYS36 4.4 0.0 1.0
OE1 A:GLU51 4.4 0.0 1.0
CA A:CYS49 4.4 0.0 1.0
CB A:LYS41 4.5 0.0 1.0
CG A:HIS44 4.5 0.0 1.0
HZ2 A:LYS38 4.5 0.0 1.0
ND1 A:HIS44 4.5 0.0 1.0
HA A:CYS36 4.6 0.0 1.0
N A:GLY40 4.6 0.0 1.0
HA A:CYS49 4.6 0.0 1.0
C A:CYS39 4.6 0.0 1.0
H A:LYS41 4.6 0.0 1.0
HD3 A:LYS41 4.7 0.0 1.0
HB2 A:LYS41 4.7 0.0 1.0
HG3 A:LYS38 4.8 0.0 1.0
N A:CYS36 4.8 0.0 1.0
HA A:CYS39 4.8 0.0 1.0
HB2 A:GLU51 4.9 0.0 1.0
O A:GLN45 4.9 0.0 1.0
O A:LYS41 4.9 0.0 1.0
N A:LYS41 4.9 0.0 1.0
HZ3 A:LYS38 4.9 0.0 1.0
H A:CYS49 5.0 0.0 1.0

Reference:

S.Ramboarina, S.Druillennec, N.Morellet, S.Bouaziz, B.P.Roques. Target Specificity of Human Immunodeficiency Virus Type 1 NCP7 Requires An Intact Conformation of Its Cchc N-Terminal Zinc Finger. J.Virol. V. 78 6682 2004.
ISSN: ISSN 0022-538X
PubMed: 15163759
DOI: 10.1128/JVI.78.12.6682-6687.2004
Page generated: Wed Dec 16 03:01:32 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy