Zinc in PDB 1q3y: uc(Nmr) Structure of the CYS28HIS Mutant (D Form) of the Nucleocapsid Protein NCP7 of Hiv-1.

The binding sites of Zinc atom in the uc(Nmr) Structure of the CYS28HIS Mutant (D Form) of the Nucleocapsid Protein NCP7 of Hiv-1. (pdb code 1q3y). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the uc(Nmr) Structure of the CYS28HIS Mutant (D Form) of the Nucleocapsid Protein NCP7 of Hiv-1., PDB code: 1q3y:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the uc(Nmr) Structure of the CYS28HIS Mutant (D Form) of the Nucleocapsid Protein NCP7 of Hiv-1.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of uc(Nmr) Structure of the CYS28HIS Mutant (D Form) of the Nucleocapsid Protein NCP7 of Hiv-1. within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1 b:0.0 occ:1.00 HB3 A:CYS18 2.1 0.0 1.0 HE1 A:HIS28 2.1 0.0 1.0 ND1 A:HIS23 2.2 0.0 1.0 ND1 A:HIS28 2.3 0.0 1.0 HH22 A:ARG29 2.3 0.0 1.0 CB A:CYS18 2.5 0.0 1.0 CE1 A:HIS28 2.5 0.0 1.0 SG A:CYS18 2.6 0.0 1.0 HB2 A:CYS18 2.6 0.0 1.0 SG A:CYS15 2.8 0.0 1.0 CE1 A:HIS23 3.1 0.0 1.0 NH2 A:ARG29 3.1 0.0 1.0 HE1 A:HIS23 3.2 0.0 1.0 HH21 A:ARG29 3.2 0.0 1.0 CG A:HIS23 3.3 0.0 1.0 HZ1 A:LYS20 3.4 0.0 1.0 HA A:HIS28 3.6 0.0 1.0 HB2 A:HIS23 3.6 0.0 1.0 CG A:HIS28 3.7 0.0 1.0 HB2 A:LYS20 3.7 0.0 1.0 HB3 A:HIS23 3.7 0.0 1.0 CB A:HIS23 3.8 0.0 1.0 NE2 A:HIS28 3.8 0.0 1.0 CA A:CYS18 4.0 0.0 1.0 H A:GLY19 4.0 0.0 1.0 O A:ASN27 4.1 0.0 1.0 HH12 A:ARG29 4.2 0.0 1.0 HB3 A:LYS20 4.3 0.0 1.0 NE2 A:HIS23 4.3 0.0 1.0 CZ A:ARG29 4.3 0.0 1.0 HE3 A:LYS20 4.3 0.0 1.0 CD2 A:HIS28 4.4 0.0 1.0 HD2 A:LYS20 4.4 0.0 1.0 CA A:HIS28 4.4 0.0 1.0 CD2 A:HIS23 4.4 0.0 1.0 NZ A:LYS20 4.4 0.0 1.0 O A:ASN17 4.4 0.0 1.0 CB A:CYS15 4.4 0.0 1.0 HE2 A:HIS28 4.5 0.0 1.0 N A:CYS18 4.5 0.0 1.0 CB A:LYS20 4.5 0.0 1.0 CB A:HIS28 4.5 0.0 1.0 N A:GLY19 4.5 0.0 1.0 HA A:CYS18 4.6 0.0 1.0 C A:CYS18 4.6 0.0 1.0 HB2 A:CYS15 4.6 0.0 1.0 C A:ASN27 4.7 0.0 1.0 C A:ASN17 4.7 0.0 1.0 NH1 A:ARG29 4.7 0.0 1.0 HB3 A:HIS28 4.7 0.0 1.0 HB3 A:ASN27 4.8 0.0 1.0 CE A:LYS20 4.8 0.0 1.0 N A:HIS28 4.8 0.0 1.0 HA A:CYS15 4.9 0.0 1.0 HZ2 A:LYS20 4.9 0.0 1.0 H A:LYS20 5.0 0.0 1.0 HZ3 A:LYS20 5.0 0.0 1.0

Zinc binding site 2 out of 2 in the uc(Nmr) Structure of the CYS28HIS Mutant (D Form) of the Nucleocapsid Protein NCP7 of Hiv-1.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of uc(Nmr) Structure of the CYS28HIS Mutant (D Form) of the Nucleocapsid Protein NCP7 of Hiv-1. within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn2 b:0.0 occ:1.00 HB3 A:CYS39 2.1 0.0 1.0 HB2 A:CYS36 2.3 0.0 1.0 NE2 A:HIS44 2.4 0.0 1.0 SG A:CYS49 2.6 0.0 1.0 SG A:CYS39 2.6 0.0 1.0 HB2 A:CYS49 2.7 0.0 1.0 CB A:CYS39 2.7 0.0 1.0 SG A:CYS36 2.7 0.0 1.0 CB A:CYS36 2.8 0.0 1.0 HB3 A:CYS36 2.9 0.0 1.0 CB A:CYS49 3.0 0.0 1.0 HB2 A:CYS39 3.1 0.0 1.0 CD2 A:HIS44 3.3 0.0 1.0 HB3 A:CYS49 3.4 0.0 1.0 CE1 A:HIS44 3.4 0.0 1.0 HB3 A:LYS41 3.4 0.0 1.0 HD2 A:HIS44 3.4 0.0 1.0 HE1 A:HIS44 3.6 0.0 1.0 H A:CYS39 3.8 0.0 1.0 CA A:CYS39 4.0 0.0 1.0 H A:GLY40 4.2 0.0 1.0 CA A:CYS36 4.2 0.0 1.0 N A:CYS39 4.3 0.0 1.0 H A:CYS36 4.4 0.0 1.0 OE1 A:GLU51 4.4 0.0 1.0 CA A:CYS49 4.4 0.0 1.0 CB A:LYS41 4.5 0.0 1.0 CG A:HIS44 4.5 0.0 1.0 HZ2 A:LYS38 4.5 0.0 1.0 ND1 A:HIS44 4.5 0.0 1.0 HA A:CYS36 4.6 0.0 1.0 N A:GLY40 4.6 0.0 1.0 HA A:CYS49 4.6 0.0 1.0 C A:CYS39 4.6 0.0 1.0 H A:LYS41 4.6 0.0 1.0 HD3 A:LYS41 4.7 0.0 1.0 HB2 A:LYS41 4.7 0.0 1.0 HG3 A:LYS38 4.8 0.0 1.0 N A:CYS36 4.8 0.0 1.0 HA A:CYS39 4.8 0.0 1.0 HB2 A:GLU51 4.9 0.0 1.0 O A:GLN45 4.9 0.0 1.0 O A:LYS41 4.9 0.0 1.0 N A:LYS41 4.9 0.0 1.0 HZ3 A:LYS38 4.9 0.0 1.0 H A:CYS49 5.0 0.0 1.0

S.Ramboarina, S.Druillennec, N.Morellet, S.Bouaziz, B.P.Roques. Target Specificity of Human Immunodeficiency Virus Type 1 NCP7 Requires An Intact Conformation of Its Cchc N-Terminal Zinc Finger. J.Virol. V. 78 6682 2004.
ISSN: ISSN 0022-538X
PubMed: 15163759
DOI: 10.1128/JVI.78.12.6682-6687.2004