Zinc in PDB 1q39: Crystal Structure of the Dna Repair Enzyme Endonuclease-VIII (Nei) From E. Coli: the Wt Enzyme at 2.8 Resolution.

The structure of Crystal Structure of the Dna Repair Enzyme Endonuclease-VIII (Nei) From E. Coli: the Wt Enzyme at 2.8 Resolution., PDB code: 1q39 was solved by G.Golan, D.O.Zharkov, H.Feinberg, A.S.Fernandes, E.I.Zaika, J.H.Kycia, A.P.Grollman, G.Shoham, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.02 / 2.80
Space group	I 2 2 2
Cell size a, b, c (Å), α, β, γ (°)	57.721, 79.578, 169.653, 90.00, 90.00, 90.00
R / Rfree (%)	21.6 / 29.9

The structure of Crystal Structure of the Dna Repair Enzyme Endonuclease-VIII (Nei) From E. Coli: the Wt Enzyme at 2.8 Resolution. also contains other interesting chemical elements:

Calcium

(Ca)

3 atoms

The binding sites of Zinc atom in the Crystal Structure of the Dna Repair Enzyme Endonuclease-VIII (Nei) From E. Coli: the Wt Enzyme at 2.8 Resolution. (pdb code 1q39). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of the Dna Repair Enzyme Endonuclease-VIII (Nei) From E. Coli: the Wt Enzyme at 2.8 Resolution., PDB code: 1q39:

Zinc binding site 1 out of 1 in the Crystal Structure of the Dna Repair Enzyme Endonuclease-VIII (Nei) From E. Coli: the Wt Enzyme at 2.8 Resolution.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the Dna Repair Enzyme Endonuclease-VIII (Nei) From E. Coli: the Wt Enzyme at 2.8 Resolution. within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn301 b:55.1 occ:1.00 SG A:CYS260 2.1 49.4 1.0 SG A:CYS237 2.3 39.3 1.0 SG A:CYS257 2.3 44.6 1.0 SG A:CYS240 2.4 49.5 1.0 CB A:CYS237 3.1 44.9 1.0 CB A:CYS257 3.4 49.4 1.0 CB A:CYS260 3.4 50.9 1.0 N A:CYS260 3.5 58.0 1.0 N A:CYS240 3.6 62.2 1.0 CB A:CYS240 3.6 55.9 1.0 CB A:ARG239 4.0 59.5 1.0 CA A:CYS260 4.1 57.1 1.0 CA A:CYS240 4.1 60.2 1.0 NE1 A:TRP176 4.4 38.1 1.0 C A:GLY259 4.4 56.9 1.0 N A:GLY241 4.5 48.3 1.0 CA A:CYS237 4.5 65.0 1.0 CA A:GLY259 4.6 55.9 1.0 OG A:SER242 4.6 55.4 1.0 C A:ARG239 4.6 61.8 1.0 O A:CYS237 4.7 69.0 1.0 CA A:ARG239 4.7 62.0 1.0 CB A:SER242 4.7 54.1 1.0 C A:CYS240 4.7 59.6 1.0 N A:SER242 4.7 50.7 1.0 CA A:CYS257 4.8 49.2 1.0 C A:CYS237 4.9 67.9 1.0 N A:ARG239 4.9 63.4 1.0 O A:CYS257 4.9 49.4 1.0 N A:GLY259 4.9 54.7 1.0 NH1 A:ARG239 4.9 59.7 1.0

G.Golan, D.O.Zharkov, H.Feinberg, A.S.Fernandes, E.I.Zaika, J.H.Kycia, A.P.Grollman, G.Shoham. Structure of the Uncomplexed Dna Repair Enzyme Endonuclease VIII Indicates Significant Interdomain Flexibility. Nucleic Acids Res. V. 33 5006 2005.
ISSN: ISSN 0305-1048
PubMed: 16145054
DOI: 10.1093/NAR/GKI796