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Zinc in PDB 1pcj: Enzyme-Ligand Complex of P. Aeruginosa Pmm/Pgm

Enzymatic activity of Enzyme-Ligand Complex of P. Aeruginosa Pmm/Pgm

All present enzymatic activity of Enzyme-Ligand Complex of P. Aeruginosa Pmm/Pgm:
5.4.2.8;

Protein crystallography data

The structure of Enzyme-Ligand Complex of P. Aeruginosa Pmm/Pgm, PDB code: 1pcj was solved by C.Regni, P.A.Tipton, L.J.Beamer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 55.90 / 2.00
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 70.896, 74.307, 85.476, 90.00, 90.00, 90.00
R / Rfree (%) 16.3 / 20.3

Zinc Binding Sites:

The binding sites of Zinc atom in the Enzyme-Ligand Complex of P. Aeruginosa Pmm/Pgm (pdb code 1pcj). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Enzyme-Ligand Complex of P. Aeruginosa Pmm/Pgm, PDB code: 1pcj:

Zinc binding site 1 out of 1 in 1pcj

Go back to Zinc Binding Sites List in 1pcj
Zinc binding site 1 out of 1 in the Enzyme-Ligand Complex of P. Aeruginosa Pmm/Pgm


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Enzyme-Ligand Complex of P. Aeruginosa Pmm/Pgm within 5.0Å range:
probe atom residue distance (Å) B Occ
X:Zn500

b:30.9
occ:1.00
OD1 X:ASP246 1.9 23.9 1.0
OD2 X:ASP242 1.9 22.0 1.0
OD2 X:ASP244 2.0 24.7 1.0
O3P X:SEP108 2.1 38.3 1.0
OG X:SEP108 2.9 38.2 1.0
CG X:ASP246 2.9 23.4 1.0
CG X:ASP242 2.9 23.8 1.0
CG X:ASP244 2.9 24.7 1.0
P X:SEP108 3.0 39.7 1.0
OD1 X:ASP244 3.1 24.6 1.0
OD1 X:ASP242 3.2 22.5 1.0
OD2 X:ASP246 3.2 25.8 1.0
CB X:SEP108 3.9 35.1 1.0
O2P X:SEP108 3.9 41.2 1.0
NZ X:LYS118 4.0 30.1 1.0
CE1 X:HIS329 4.1 27.6 1.0
CG X:ARG247 4.1 29.4 1.0
N X:ASP246 4.2 23.1 1.0
CA X:SEP108 4.2 35.1 1.0
CB X:ASP246 4.2 24.0 1.0
O1P X:SEP108 4.3 39.6 1.0
CB X:ASP242 4.3 24.0 1.0
CB X:ASP244 4.3 23.3 1.0
NE X:ARG247 4.4 36.9 1.0
N X:ARG247 4.4 25.1 1.0
N X:ASP244 4.5 23.8 1.0
CA X:ASP246 4.5 23.8 1.0
C X:SEP108 4.6 35.0 1.0
C X:ASP246 4.6 24.3 1.0
CB X:ARG247 4.7 26.1 1.0
CD X:ARG247 4.8 32.9 1.0
CA X:ASP244 4.8 23.5 1.0
NE2 X:HIS329 4.8 26.4 1.0
N X:GLY245 4.8 22.7 1.0
N X:HIS109 4.9 35.6 1.0
C X:ASP244 4.9 23.0 1.0

Reference:

C.Regni, L.Naught, P.A.Tipton, L.J.Beamer. Structural Basis of Diverse Substrate Recognition By the Enzyme Pmm/Pgm From P. Aeruginosa. Structure V. 12 55 2004.
ISSN: ISSN 0969-2126
PubMed: 14725765
DOI: 10.1016/J.STR.2003.11.015
Page generated: Wed Dec 16 03:00:38 2020

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