Atomistry » Zinc » PDB 1oht-1p0f » 1oyy
Atomistry »
  Zinc »
    PDB 1oht-1p0f »
      1oyy »

Zinc in PDB 1oyy: Structure of the Recq Catalytic Core Bound to Atp-Gamma-S

Protein crystallography data

The structure of Structure of the Recq Catalytic Core Bound to Atp-Gamma-S, PDB code: 1oyy was solved by D.A.Bernstein, M.C.Zittel, J.L.Keck, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.50
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 66.591, 54.534, 78.686, 90.00, 110.78, 90.00
R / Rfree (%) 21 / 29.8

Other elements in 1oyy:

The structure of Structure of the Recq Catalytic Core Bound to Atp-Gamma-S also contains other interesting chemical elements:

Manganese (Mn) 2 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of the Recq Catalytic Core Bound to Atp-Gamma-S (pdb code 1oyy). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Structure of the Recq Catalytic Core Bound to Atp-Gamma-S, PDB code: 1oyy:

Zinc binding site 1 out of 1 in 1oyy

Go back to Zinc Binding Sites List in 1oyy
Zinc binding site 1 out of 1 in the Structure of the Recq Catalytic Core Bound to Atp-Gamma-S


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of the Recq Catalytic Core Bound to Atp-Gamma-S within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn524

b:32.9
occ:1.00
SG A:CYS403 2.4 37.1 1.0
SG A:CYS397 2.4 33.8 1.0
SG A:CYS400 2.4 32.1 1.0
SG A:CYS380 2.5 33.0 1.0
CB A:CYS380 3.4 30.1 1.0
N A:CYS397 3.4 45.1 1.0
CB A:CYS403 3.4 42.0 1.0
CB A:CYS400 3.5 28.8 1.0
CB A:CYS397 3.5 22.8 1.0
N A:GLY398 3.7 39.0 1.0
CA A:CYS380 3.8 33.0 1.0
CA A:CYS397 3.9 38.3 1.0
N A:CYS400 4.0 27.9 1.0
N A:ASN399 4.2 41.0 1.0
N A:ARG381 4.2 35.1 1.0
C A:CYS397 4.2 39.5 1.0
CA A:CYS400 4.3 28.5 1.0
C A:CYS380 4.3 30.6 1.0
N A:CYS403 4.3 29.1 1.0
CA A:CYS403 4.4 37.8 1.0
C A:PRO396 4.5 47.7 1.0
N A:ARG382 4.6 32.4 1.0
C A:ASN399 4.6 34.2 1.0
CA A:GLY398 4.6 39.3 1.0
CB A:ARG382 4.7 33.0 1.0
CA A:PRO396 4.8 49.0 1.0
CB A:PRO396 4.8 48.0 1.0
C A:GLY398 4.9 41.5 1.0
C A:CYS400 4.9 31.5 1.0
O A:CYS400 4.9 27.3 1.0

Reference:

D.A.Bernstein, M.C.Zittel, J.L.Keck. High-Resolution Structure of the E. Coli Recq Helicase Catalytic Core Embo J. V. 22 4910 2003.
ISSN: ISSN 0261-4189
PubMed: 14517231
DOI: 10.1093/EMBOJ/CDG500
Page generated: Wed Dec 16 03:00:07 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy