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Zinc in PDB 1ndy: Crystal Structure of Adenosine Deaminase Complexed with FR230513

Enzymatic activity of Crystal Structure of Adenosine Deaminase Complexed with FR230513

All present enzymatic activity of Crystal Structure of Adenosine Deaminase Complexed with FR230513:
3.5.4.4;

Protein crystallography data

The structure of Crystal Structure of Adenosine Deaminase Complexed with FR230513, PDB code: 1ndy was solved by T.Kinoshita, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 8.00 / 2.00
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 77.920, 77.920, 136.320, 90.00, 90.00, 90.00
R / Rfree (%) n/a / n/a

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Adenosine Deaminase Complexed with FR230513 (pdb code 1ndy). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Adenosine Deaminase Complexed with FR230513, PDB code: 1ndy:

Zinc binding site 1 out of 1 in 1ndy

Go back to Zinc Binding Sites List in 1ndy
Zinc binding site 1 out of 1 in the Crystal Structure of Adenosine Deaminase Complexed with FR230513


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Adenosine Deaminase Complexed with FR230513 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn400

b:14.9
occ:1.00
NE2 A:HIS17 2.0 9.6 1.0
O A:HOH1195 2.0 15.0 1.0
NE2 A:HIS15 2.0 10.5 1.0
NE2 A:HIS214 2.2 14.3 1.0
OD2 A:ASP295 2.2 15.9 1.0
CD2 A:HIS17 2.8 12.6 1.0
CD2 A:HIS15 2.9 11.0 1.0
CE1 A:HIS17 3.1 9.8 1.0
CD2 A:HIS214 3.2 11.1 1.0
CE1 A:HIS15 3.2 13.4 1.0
CG A:ASP295 3.2 12.8 1.0
CE1 A:HIS214 3.3 11.5 1.0
OD1 A:ASP295 3.6 13.4 1.0
CG A:HIS17 4.1 12.3 1.0
NE2 A:HIS238 4.1 12.8 1.0
N10 A:FR31001 4.2 12.5 1.0
CG A:HIS15 4.2 10.8 1.0
ND1 A:HIS17 4.2 12.4 1.0
ND1 A:HIS15 4.2 12.3 1.0
O A:HOH1164 4.3 58.7 1.0
O A:HOH1128 4.3 17.1 1.0
CG A:HIS214 4.4 11.1 1.0
C8 A:FR31001 4.4 12.2 1.0
ND1 A:HIS214 4.4 10.3 1.0
CB A:ASP295 4.6 13.1 1.0
O A:HOH1228 4.7 15.7 1.0
O9 A:FR31001 4.8 15.0 1.0
CD A:ARG101 4.8 8.9 1.0
OD2 A:ASP296 4.9 16.5 1.0
C5 A:FR31001 4.9 10.9 1.0
CA A:ASP295 4.9 13.5 1.0
CD2 A:HIS238 5.0 14.2 1.0

Reference:

T.Terasaka, T.Kinoshita, M.Kuno, I.Nakanishi. A Highly Potent Non-Nucleoside Adenosine Deaminase Inhibitor: Efficient Drug Discovery By Intentional Lead Hybridization J.Am.Chem.Soc. V. 126 34 2004.
ISSN: ISSN 0002-7863
PubMed: 14709046
DOI: 10.1021/JA038606L
Page generated: Wed Dec 16 02:58:32 2020

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