Zinc in PDB 1nd2: The Structure of Rhinovirus 16

The structure of The Structure of Rhinovirus 16, PDB code: 1nd2 was solved by Y.Zhang, A.A.Simpson, C.M.Bator, S.Chakravarty, D.C.Pevear, G.A.Skochko, T.M.Tull, G.Diana, M.G.Rossmann, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 2.50
Space group	P 2 21 21
Cell size a, b, c (Å), α, β, γ (°)	360.374, 343.626, 332.650, 90.00, 90.00, 90.00
R / Rfree (%)	20.2 / 20.6

The binding sites of Zinc atom in the The Structure of Rhinovirus 16 (pdb code 1nd2). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the The Structure of Rhinovirus 16, PDB code: 1nd2:

Zinc binding site 1 out of 1 in the The Structure of Rhinovirus 16


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Structure of Rhinovirus 16 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn6000 b:42.7 occ:0.20 NE2 A:HIS134 2.8 46.0 1.0 CE1 A:HIS134 3.5 45.5 1.0 CD2 A:HIS134 4.0 44.7 1.0 ND1 A:HIS134 4.7 43.8 1.0 CG A:HIS134 5.0 41.9 1.0

Y.Zhang, A.A.Simpson, R.M.Ledford, C.M.Bator, S.Chakravarty, G.A.Skochko, T.M.Demenczuk, A.Watanyar, D.C.Pevear, M.G.Rossmann. Structural and Virological Studies of the Stages of Virus Replication That Are Affected By Antirhinovirus Compounds J.Virol. V. 78 11061 2004.
ISSN: ISSN 0022-538X
PubMed: 15452226
DOI: 10.1128/JVI.78.20.11061-11069.2004