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Zinc in PDB 1nd1: Amino Acid Sequence and Crystal Structure of BAP1, A Metalloproteinase From Bothrops Asper Snake Venom That Exerts Multiple Tissue-Damaging Activities.

Protein crystallography data

The structure of Amino Acid Sequence and Crystal Structure of BAP1, A Metalloproteinase From Bothrops Asper Snake Venom That Exerts Multiple Tissue-Damaging Activities., PDB code: 1nd1 was solved by L.Watanabe, J.D.Shannon, R.H.Valente, A.Rucavado, A.Alape-Giron, A.S.Kamiguti, R.D.Theakston, J.W.Fox, J.M.Gutierrez, R.K.Arni, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 18.31 / 1.93
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 38.425, 60.364, 86.257, 90.00, 90.00, 90.00
R / Rfree (%) 19.1 / 21.6

Zinc Binding Sites:

The binding sites of Zinc atom in the Amino Acid Sequence and Crystal Structure of BAP1, A Metalloproteinase From Bothrops Asper Snake Venom That Exerts Multiple Tissue-Damaging Activities. (pdb code 1nd1). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Amino Acid Sequence and Crystal Structure of BAP1, A Metalloproteinase From Bothrops Asper Snake Venom That Exerts Multiple Tissue-Damaging Activities., PDB code: 1nd1:

Zinc binding site 1 out of 1 in 1nd1

Go back to Zinc Binding Sites List in 1nd1
Zinc binding site 1 out of 1 in the Amino Acid Sequence and Crystal Structure of BAP1, A Metalloproteinase From Bothrops Asper Snake Venom That Exerts Multiple Tissue-Damaging Activities.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Amino Acid Sequence and Crystal Structure of BAP1, A Metalloproteinase From Bothrops Asper Snake Venom That Exerts Multiple Tissue-Damaging Activities. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn400

b:26.9
occ:1.00
NE2 A:HIS152 2.0 25.4 1.0
NE2 A:HIS142 2.1 19.3 1.0
NE2 A:HIS146 2.1 17.6 1.0
O A:HOH467 2.3 29.4 1.0
CE1 A:HIS152 2.9 24.5 1.0
CD2 A:HIS152 3.0 23.7 1.0
CD2 A:HIS142 3.0 18.4 1.0
CE1 A:HIS146 3.0 22.6 1.0
CE1 A:HIS142 3.0 20.1 1.0
CD2 A:HIS146 3.2 19.0 1.0
O A:HOH468 3.9 45.6 1.0
O A:HOH419 4.0 46.8 1.0
ND1 A:HIS152 4.0 23.5 1.0
CG A:HIS152 4.1 26.1 1.0
ND1 A:HIS142 4.1 18.7 1.0
CG A:HIS142 4.2 19.3 1.0
ND1 A:HIS146 4.2 21.3 1.0
OE2 A:GLU143 4.3 22.2 1.0
CG A:HIS146 4.3 19.1 1.0
O A:HOH469 4.6 27.6 1.0
O A:HOH470 4.8 30.3 1.0
OE1 A:GLU143 4.9 20.3 1.0
CD A:GLU143 5.0 20.4 1.0

Reference:

L.Watanabe, J.D.Shannon, R.H.Valente, A.Rucavado, A.Alape-Giron, A.S.Kamiguti, R.D.Theakston, J.W.Fox, J.M.Gutierrez, R.K.Arni. Amino Acid Sequence and Crystal Structure of BAP1, A Metalloproteinase From Bothrops Asper Snake Venom That Exerts Multiple Tissue-Damaging Activities Protein Sci. V. 12 2273 2003.
ISSN: ISSN 0961-8368
PubMed: 14500885
DOI: 10.1110/PS.03102403
Page generated: Thu Oct 29 07:28:44 2020
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