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Zinc in PDB 1ncp: Structural Characterization of A 39 Residue Synthetic Peptide Containing the Two Zinc Binding Domains From the Hiv-1 P7 Nucleocapsid Protein By Cd and uc(Nmr) Spectroscopy

Zinc Binding Sites:

The binding sites of Zinc atom in the Structural Characterization of A 39 Residue Synthetic Peptide Containing the Two Zinc Binding Domains From the Hiv-1 P7 Nucleocapsid Protein By Cd and uc(Nmr) Spectroscopy (pdb code 1ncp). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Structural Characterization of A 39 Residue Synthetic Peptide Containing the Two Zinc Binding Domains From the Hiv-1 P7 Nucleocapsid Protein By Cd and uc(Nmr) Spectroscopy, PDB code: 1ncp:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 1ncp

Go back to Zinc Binding Sites List in 1ncp
Zinc binding site 1 out of 2 in the Structural Characterization of A 39 Residue Synthetic Peptide Containing the Two Zinc Binding Domains From the Hiv-1 P7 Nucleocapsid Protein By Cd and uc(Nmr) Spectroscopy


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structural Characterization of A 39 Residue Synthetic Peptide Containing the Two Zinc Binding Domains From the Hiv-1 P7 Nucleocapsid Protein By Cd and uc(Nmr) Spectroscopy within 5.0Å range:
probe atom residue distance (Å) B Occ
N:Zn60

b:4.0
occ:1.00
ZN C:ZN61 0.3 0.4 1.0
NE2 C:HIS32 1.9 0.4 1.0
NE2 N:HIS11 2.0 0.2 1.0
SG C:CYS24 2.2 0.3 1.0
SG C:CYS27 2.2 0.4 1.0
SG N:CYS3 2.3 0.2 1.0
SG N:CYS16 2.3 0.3 1.0
SG N:CYS6 2.3 0.2 1.0
SG C:CYS37 2.6 0.5 1.0
H N:CYS6 2.6 0.3 1.0
H C:CYS27 2.7 0.4 1.0
CE1 C:HIS32 2.8 0.5 1.0
CE1 N:HIS11 2.9 0.3 1.0
HE1 C:HIS32 2.9 0.6 1.0
H N:GLY7 3.0 0.4 1.0
HB2 C:CYS24 3.0 0.5 1.0
HE1 N:HIS11 3.0 0.4 1.0
CB C:CYS24 3.1 0.3 1.0
HB2 N:CYS16 3.1 0.5 1.0
CD2 C:HIS32 3.1 0.4 1.0
HB3 C:CYS24 3.1 0.4 1.0
CD2 N:HIS11 3.1 0.2 1.0
HB2 N:CYS3 3.3 0.3 1.0
HB3 N:CYS6 3.3 0.3 1.0
HB2 C:CYS37 3.3 1.3 1.0
CB N:CYS16 3.3 0.3 1.0
CB N:CYS3 3.3 0.2 1.0
CB N:CYS6 3.3 0.3 1.0
CB C:CYS27 3.3 0.4 1.0
H N:LYS8 3.4 0.5 1.0
H C:GLY28 3.4 0.5 1.0
HB3 C:CYS27 3.4 0.4 1.0
HD2 N:HIS11 3.5 0.3 1.0
N N:CYS6 3.5 0.2 1.0
HD2 C:HIS32 3.5 0.5 1.0
N C:CYS27 3.5 0.3 1.0
HB3 N:CYS3 3.6 0.3 1.0
CB C:CYS37 3.6 0.6 1.0
HB2 N:LYS8 3.7 0.8 1.0
HB3 C:LYS26 3.8 0.8 1.0
HB2 C:LYS29 3.8 0.6 1.0
HB3 N:CYS16 3.8 0.7 1.0
N N:GLY7 3.9 0.2 1.0
CA N:CYS6 3.9 0.2 1.0
CA C:CYS27 3.9 0.4 1.0
HB3 N:ASN5 3.9 0.8 1.0
ND1 C:HIS32 3.9 0.5 1.0
HB2 N:ASN5 4.0 0.8 1.0
ND1 N:HIS11 4.0 0.3 1.0
N C:GLY28 4.1 0.4 1.0
H C:LYS29 4.1 0.7 1.0
CG C:HIS32 4.2 0.4 1.0
O C:GLN33 4.2 1.1 1.0
H N:ASN5 4.2 0.4 1.0
CG N:HIS11 4.2 0.2 1.0
HB2 C:CYS27 4.3 0.5 1.0
HB2 C:LYS26 4.3 0.9 1.0
HB2 N:CYS6 4.3 0.4 1.0
H C:LYS26 4.3 0.4 1.0
HA C:CYS37 4.3 0.7 1.0
N N:LYS8 4.3 0.3 1.0
HB3 C:CYS37 4.4 1.3 1.0
C N:CYS6 4.4 0.3 1.0
CB N:ASN5 4.4 0.4 1.0
C C:CYS27 4.4 0.4 1.0
CB C:LYS26 4.5 0.5 1.0
CA C:CYS24 4.5 0.3 1.0
H N:ARG17 4.5 1.8 1.0
N C:LYS29 4.6 0.4 1.0
HA N:CYS16 4.6 0.7 1.0
HB3 C:LYS29 4.6 0.6 1.0
CA N:CYS16 4.6 0.4 1.0
CA C:CYS37 4.6 0.5 1.0
C N:ASN5 4.6 0.3 1.0
CB C:LYS29 4.7 0.5 1.0
C C:LYS26 4.7 0.4 1.0
CB N:LYS8 4.7 0.6 1.0
HA C:MET34 4.7 0.5 1.0
CA N:CYS3 4.8 0.3 1.0
HD1 C:HIS32 4.8 0.6 1.0
O C:LYS29 4.8 0.5 1.0
N N:ASN5 4.8 0.3 1.0
HD1 N:HIS11 4.9 0.4 1.0
HA N:ALA13 4.9 0.4 1.0
HA C:CYS24 4.9 0.4 1.0
CA N:ASN5 4.9 0.4 1.0
HA N:CYS6 4.9 0.3 1.0
HA C:CYS27 4.9 0.4 1.0
N C:LYS26 5.0 0.3 1.0
CA C:LYS26 5.0 0.4 1.0

Zinc binding site 2 out of 2 in 1ncp

Go back to Zinc Binding Sites List in 1ncp
Zinc binding site 2 out of 2 in the Structural Characterization of A 39 Residue Synthetic Peptide Containing the Two Zinc Binding Domains From the Hiv-1 P7 Nucleocapsid Protein By Cd and uc(Nmr) Spectroscopy


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structural Characterization of A 39 Residue Synthetic Peptide Containing the Two Zinc Binding Domains From the Hiv-1 P7 Nucleocapsid Protein By Cd and uc(Nmr) Spectroscopy within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn61

b:0.4
occ:1.00
ZN N:ZN60 0.3 4.0 1.0
SG N:CYS16 2.0 0.3 1.0
NE2 C:HIS32 2.0 0.4 1.0
NE2 N:HIS11 2.1 0.2 1.0
SG C:CYS24 2.3 0.3 1.0
SG C:CYS27 2.3 0.4 1.0
SG C:CYS37 2.3 0.5 1.0
SG N:CYS3 2.4 0.2 1.0
SG N:CYS6 2.5 0.2 1.0
H N:CYS6 2.6 0.3 1.0
H C:CYS27 2.7 0.4 1.0
HB2 N:CYS16 2.9 0.5 1.0
CE1 C:HIS32 2.9 0.5 1.0
CE1 N:HIS11 3.0 0.3 1.0
CB N:CYS16 3.1 0.3 1.0
HE1 C:HIS32 3.1 0.6 1.0
HB2 C:CYS37 3.1 1.3 1.0
CD2 C:HIS32 3.1 0.4 1.0
HE1 N:HIS11 3.2 0.4 1.0
CD2 N:HIS11 3.2 0.2 1.0
H N:GLY7 3.2 0.4 1.0
HB3 N:CYS6 3.2 0.3 1.0
HB2 C:CYS24 3.3 0.5 1.0
CB C:CYS24 3.3 0.3 1.0
HB3 C:CYS27 3.3 0.4 1.0
CB C:CYS37 3.3 0.6 1.0
CB C:CYS27 3.4 0.4 1.0
CB N:CYS6 3.4 0.3 1.0
HB3 C:CYS24 3.4 0.4 1.0
HD2 C:HIS32 3.5 0.5 1.0
N N:CYS6 3.5 0.2 1.0
HB2 N:CYS3 3.5 0.3 1.0
N C:CYS27 3.5 0.3 1.0
HD2 N:HIS11 3.5 0.3 1.0
CB N:CYS3 3.6 0.2 1.0
HB3 N:CYS16 3.6 0.7 1.0
H C:GLY28 3.6 0.5 1.0
HB3 C:LYS26 3.6 0.8 1.0
H N:LYS8 3.7 0.5 1.0
HB3 N:ASN5 3.7 0.8 1.0
HB3 N:CYS3 3.8 0.3 1.0
HB2 N:ASN5 3.8 0.8 1.0
HB2 N:LYS8 3.9 0.8 1.0
CA N:CYS6 4.0 0.2 1.0
CA C:CYS27 4.0 0.4 1.0
HB2 C:LYS29 4.0 0.6 1.0
ND1 C:HIS32 4.0 0.5 1.0
HA C:CYS37 4.1 0.7 1.0
N N:GLY7 4.1 0.2 1.0
HB3 C:CYS37 4.1 1.3 1.0
ND1 N:HIS11 4.1 0.3 1.0
HB2 C:LYS26 4.1 0.9 1.0
H N:ASN5 4.2 0.4 1.0
O C:GLN33 4.2 1.1 1.0
CG C:HIS32 4.2 0.4 1.0
H N:ARG17 4.2 1.8 1.0
CB N:ASN5 4.3 0.4 1.0
HB2 C:CYS27 4.3 0.5 1.0
N C:GLY28 4.3 0.4 1.0
CG N:HIS11 4.3 0.2 1.0
HB2 N:CYS6 4.3 0.4 1.0
HA N:CYS16 4.3 0.7 1.0
H C:LYS26 4.3 0.4 1.0
CA N:CYS16 4.3 0.4 1.0
CB C:LYS26 4.3 0.5 1.0
H C:LYS29 4.4 0.7 1.0
CA C:CYS37 4.4 0.5 1.0
C N:CYS6 4.6 0.3 1.0
C C:CYS27 4.6 0.4 1.0
C N:ASN5 4.6 0.3 1.0
HA C:MET34 4.6 0.5 1.0
N N:LYS8 4.6 0.3 1.0
C C:LYS26 4.7 0.4 1.0
CA C:CYS24 4.7 0.3 1.0
HA N:ALA13 4.8 0.4 1.0
CA N:ASN5 4.8 0.4 1.0
N N:ASN5 4.8 0.3 1.0
HB3 C:LYS29 4.9 0.6 1.0
N C:LYS29 4.9 0.4 1.0
HD1 C:HIS32 4.9 0.6 1.0
CB C:LYS29 4.9 0.5 1.0
HA N:CYS6 4.9 0.3 1.0
CA C:LYS26 4.9 0.4 1.0
HA C:CYS27 4.9 0.4 1.0
CA N:CYS3 5.0 0.3 1.0
N N:ARG17 5.0 1.5 1.0
HD1 N:HIS11 5.0 0.4 1.0
CB N:LYS8 5.0 0.6 1.0
N C:LYS26 5.0 0.3 1.0

Reference:

J.G.Omichinski, G.M.Clore, K.Sakaguchi, E.Appella, A.M.Gronenborn. Structural Characterization of A 39-Residue Synthetic Peptide Containing the Two Zinc Binding Domains From the Hiv-1 P7 Nucleocapsid Protein By Cd and uc(Nmr) Spectroscopy. Febs Lett. V. 292 25 1991.
ISSN: ISSN 0014-5793
PubMed: 1959614
DOI: 10.1016/0014-5793(91)80825-N
Page generated: Fri Sep 25 22:43:07 2020
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