Zinc in PDB 1n08: Crystal Structure of Schizosaccharomyces Pombe Riboflavin Kinase Reveals A Novel Atp and Riboflavin Binding Fold

All present enzymatic activity of Crystal Structure of Schizosaccharomyces Pombe Riboflavin Kinase Reveals A Novel Atp and Riboflavin Binding Fold:
2.7.1.26;

The structure of Crystal Structure of Schizosaccharomyces Pombe Riboflavin Kinase Reveals A Novel Atp and Riboflavin Binding Fold, PDB code: 1n08 was solved by S.Bauer, K.Kemter, A.Bacher, R.Huber, M.Fischer, S.Steinbacher, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 1.60
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	41.235, 45.321, 52.849, 89.70, 112.04, 98.41
R / Rfree (%)	22 / 25.2

The binding sites of Zinc atom in the Crystal Structure of Schizosaccharomyces Pombe Riboflavin Kinase Reveals A Novel Atp and Riboflavin Binding Fold (pdb code 1n08). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of Schizosaccharomyces Pombe Riboflavin Kinase Reveals A Novel Atp and Riboflavin Binding Fold, PDB code: 1n08:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of Schizosaccharomyces Pombe Riboflavin Kinase Reveals A Novel Atp and Riboflavin Binding Fold


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Schizosaccharomyces Pombe Riboflavin Kinase Reveals A Novel Atp and Riboflavin Binding Fold within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn501 b:40.9 occ:1.00 O1B A:ADP301 2.2 39.1 1.0 O A:HOH569 2.2 26.5 1.0 O A:HOH640 2.3 31.2 1.0 OG1 A:THR45 2.3 26.2 1.0 O A:THR45 2.4 19.0 1.0 O1A A:ADP301 2.7 41.4 1.0 C A:THR45 3.3 17.9 1.0 PB A:ADP301 3.4 42.7 1.0 CB A:THR45 3.4 23.0 1.0 OG A:SER38 3.6 41.7 1.0 O3B A:ADP301 3.6 42.1 1.0 O A:HOH622 3.7 42.9 1.0 CA A:THR45 3.7 18.6 1.0 N A:THR45 3.8 20.3 1.0 PA A:ADP301 3.9 43.0 1.0 C5' A:ADP301 4.0 27.6 1.0 O3A A:ADP301 4.2 41.0 1.0 O A:HOH504 4.3 15.1 1.0 N A:ALA46 4.4 13.5 1.0 O5' A:ADP301 4.5 34.0 1.0 O2B A:ADP301 4.5 44.0 1.0 N A:SER38 4.6 34.9 1.0 CG2 A:THR45 4.7 25.0 1.0 CB A:SER38 4.7 37.3 1.0 OE1 A:GLU96 4.7 37.4 1.0 N A:ASN47 4.8 13.2 1.0 CA A:ALA46 4.9 12.5 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of Schizosaccharomyces Pombe Riboflavin Kinase Reveals A Novel Atp and Riboflavin Binding Fold


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Schizosaccharomyces Pombe Riboflavin Kinase Reveals A Novel Atp and Riboflavin Binding Fold within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn601 b:43.9 occ:1.00 O1B B:ADP401 2.4 36.3 1.0 OG1 B:THR45 2.6 22.6 1.0 O B:THR45 2.7 15.9 1.0 OG B:SER38 3.1 22.3 1.0 O2B B:ADP401 3.1 37.8 1.0 PB B:ADP401 3.3 32.4 1.0 C B:THR45 3.6 16.0 1.0 OD1 B:ASN47 3.6 33.3 1.0 CB B:SER38 3.7 23.2 1.0 CB B:THR45 3.8 17.7 1.0 O B:HOH616 3.9 25.3 1.0 CA B:THR45 4.0 16.5 1.0 N B:THR45 4.0 17.5 1.0 OE2 B:GLU96 4.0 31.3 1.0 ND2 B:ASN47 4.1 27.8 1.0 O3A B:ADP401 4.1 34.4 1.0 C5' B:ADP401 4.2 20.8 1.0 CG B:ASN47 4.2 25.4 1.0 O B:HOH615 4.4 22.8 1.0 O B:HOH609 4.4 19.0 1.0 CD B:ARG36 4.4 35.8 1.0 CB B:ARG36 4.6 30.8 1.0 O3B B:ADP401 4.6 34.4 1.0 N B:ALA46 4.7 13.6 1.0 N B:SER38 4.7 21.2 1.0 CD B:GLU96 4.8 29.9 1.0 PA B:ADP401 4.8 33.1 1.0 O5' B:ADP401 4.8 27.8 1.0 CA B:SER38 4.8 21.8 1.0 O1A B:ADP401 4.9 33.1 1.0 NH2 B:ARG36 4.9 37.5 1.0 CG2 B:THR45 4.9 21.5 1.0 N B:ASN47 5.0 15.6 1.0

S.Bauer, K.Kemter, A.Bacher, R.Huber, M.Fischer, S.Steinbacher. Crystal Structure of Schizosaccharomyces Pombe Riboflavin Kinase Reveals A Novel Atp and Riboflavin Binding Fold J.Mol.Biol. V. 326 1463 2003.
ISSN: ISSN 0022-2836
PubMed: 12595258
DOI: 10.1016/S0022-2836(03)00059-7