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Zinc in PDB 1mm2: Solution Structure of the 2ND Phd Domain From MI2B

Zinc Binding Sites:

The binding sites of Zinc atom in the Solution Structure of the 2ND Phd Domain From MI2B (pdb code 1mm2). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Solution Structure of the 2ND Phd Domain From MI2B, PDB code: 1mm2:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 1mm2

Go back to Zinc Binding Sites List in 1mm2
Zinc binding site 1 out of 2 in the Solution Structure of the 2ND Phd Domain From MI2B


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of the 2ND Phd Domain From MI2B within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn62

b:0.0
occ:1.00
SG A:CYS27 2.3 0.0 1.0
SG A:CYS53 2.3 0.0 1.0
SG A:CYS50 2.3 0.0 1.0
SG A:CYS24 2.3 0.0 1.0
H A:CYS27 2.9 0.0 1.0
H A:CYS50 3.0 0.0 1.0
HB2 A:CYS53 3.1 0.0 1.0
HB2 A:CYS27 3.1 0.0 1.0
HB3 A:CYS50 3.2 0.0 1.0
CB A:CYS27 3.3 0.0 1.0
CB A:CYS53 3.3 0.0 1.0
HB2 A:CYS24 3.3 0.0 1.0
CB A:CYS50 3.4 0.0 1.0
CB A:CYS24 3.4 0.0 1.0
HB3 A:CYS24 3.6 0.0 1.0
N A:CYS50 3.6 0.0 1.0
HG1 A:THR26 3.7 0.0 1.0
HE A:ARG52 3.7 0.0 1.0
HG A:SER29 3.7 0.0 1.0
N A:CYS27 3.7 0.0 1.0
H A:CYS53 3.7 0.0 1.0
HB A:THR26 3.8 0.0 1.0
HZ1 A:LYS59 3.8 0.0 1.0
HG2 A:ARG52 3.8 0.0 1.0
HB3 A:LEU49 3.9 0.0 1.0
OG1 A:THR26 4.0 0.0 1.0
CA A:CYS50 4.1 0.0 1.0
H A:THR26 4.1 0.0 1.0
HB3 A:CYS53 4.1 0.0 1.0
HB3 A:CYS27 4.1 0.0 1.0
CA A:CYS27 4.2 0.0 1.0
N A:CYS53 4.2 0.0 1.0
CA A:CYS53 4.2 0.0 1.0
HB2 A:CYS50 4.2 0.0 1.0
HD23 A:LEU49 4.3 0.0 1.0
HA A:CYS53 4.4 0.0 1.0
CB A:THR26 4.4 0.0 1.0
HD2 A:ARG52 4.4 0.0 1.0
HA A:LEU49 4.5 0.0 1.0
NE A:ARG52 4.6 0.0 1.0
OG A:SER29 4.6 0.0 1.0
C A:LEU49 4.7 0.0 1.0
HG A:LEU49 4.7 0.0 1.0
O A:CYS50 4.7 0.0 1.0
H A:ARG52 4.7 0.0 1.0
C A:CYS50 4.7 0.0 1.0
CG A:ARG52 4.8 0.0 1.0
CB A:LEU49 4.8 0.0 1.0
C A:THR26 4.8 0.0 1.0
NZ A:LYS59 4.8 0.0 1.0
CD A:ARG52 4.8 0.0 1.0
CA A:CYS24 4.8 0.0 1.0
N A:THR26 4.9 0.0 1.0
HE3 A:LYS59 4.9 0.0 1.0
CA A:LEU49 4.9 0.0 1.0
CA A:THR26 4.9 0.0 1.0
HA A:CYS27 4.9 0.0 1.0
HZ3 A:LYS59 4.9 0.0 1.0
HD22 A:LEU49 4.9 0.0 1.0
HA A:CYS50 5.0 0.0 1.0
CD2 A:LEU49 5.0 0.0 1.0

Zinc binding site 2 out of 2 in 1mm2

Go back to Zinc Binding Sites List in 1mm2
Zinc binding site 2 out of 2 in the Solution Structure of the 2ND Phd Domain From MI2B


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of the 2ND Phd Domain From MI2B within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn63

b:0.0
occ:1.00
HG A:CYS12 1.1 0.0 1.0
ND1 A:HIS32 2.0 0.0 1.0
SG A:CYS12 2.2 0.0 1.0
SG A:CYS15 2.3 0.0 1.0
SG A:CYS35 2.3 0.0 1.0
HB2 A:HIS32 2.7 0.0 1.0
CE1 A:HIS32 2.9 0.0 1.0
CG A:HIS32 3.0 0.0 1.0
HB3 A:CYS15 3.1 0.0 1.0
HE1 A:HIS32 3.2 0.0 1.0
CB A:CYS12 3.2 0.0 1.0
HB2 A:CYS12 3.2 0.0 1.0
H A:CYS15 3.2 0.0 1.0
HB3 A:CYS12 3.3 0.0 1.0
CB A:CYS15 3.3 0.0 1.0
CB A:HIS32 3.4 0.0 1.0
HB2 A:CYS35 3.4 0.0 1.0
CB A:CYS35 3.4 0.0 1.0
HB3 A:ASP17 3.5 0.0 1.0
HB3 A:CYS35 3.6 0.0 1.0
HB A:VAL14 3.9 0.0 1.0
H A:ASP17 4.0 0.0 1.0
N A:CYS15 4.0 0.0 1.0
NE2 A:HIS32 4.1 0.0 1.0
HD2 A:HIS34 4.1 0.0 1.0
CD2 A:HIS32 4.1 0.0 1.0
N A:HIS32 4.1 0.0 1.0
HB3 A:HIS32 4.1 0.0 1.0
HB2 A:CYS15 4.1 0.0 1.0
CA A:CYS15 4.2 0.0 1.0
C A:TYR31 4.2 0.0 1.0
HE2 A:HIS34 4.3 0.0 1.0
CA A:HIS32 4.3 0.0 1.0
HA A:TYR31 4.4 0.0 1.0
O A:TYR31 4.4 0.0 1.0
H A:HIS32 4.5 0.0 1.0
CB A:ASP17 4.6 0.0 1.0
O A:ASP17 4.6 0.0 1.0
CA A:CYS12 4.7 0.0 1.0
H A:LYS16 4.7 0.0 1.0
H A:VAL14 4.8 0.0 1.0
N A:ASP17 4.8 0.0 1.0
CA A:CYS35 4.8 0.0 1.0
HA A:HIS32 4.8 0.0 1.0
C A:CYS15 4.8 0.0 1.0
CD2 A:HIS34 4.8 0.0 1.0
HD21 A:LEU21 4.9 0.0 1.0
NE2 A:HIS34 4.9 0.0 1.0
HA A:CYS12 4.9 0.0 1.0
CA A:TYR31 4.9 0.0 1.0
HB2 A:ASP17 4.9 0.0 1.0
CB A:VAL14 5.0 0.0 1.0
N A:LYS16 5.0 0.0 1.0
HE2 A:HIS32 5.0 0.0 1.0

Reference:

A.H.Y.Kwan, D.A.Gell, A.Verger, M.Crossley, J.M.Matthews, J.P.Mackay. Engineering A Protein Scaffold From A Phd Finger Structure V. 11 803 2003.
ISSN: ISSN 0969-2126
PubMed: 12842043
DOI: 10.1016/S0969-2126(03)00122-9
Page generated: Wed Dec 16 02:57:16 2020

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