Atomistry » Zinc » PDB 1m2k-1mkd » 1mbx
Atomistry »
  Zinc »
    PDB 1m2k-1mkd »
      1mbx »

Zinc in PDB 1mbx: Crystal Structure Analysis of Clpsn with Transition Metal Ion Bound

Protein crystallography data

The structure of Crystal Structure Analysis of Clpsn with Transition Metal Ion Bound, PDB code: 1mbx was solved by F.Guo, L.Esser, S.K.Singh, M.R.Maurizi, D.Xia, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.54 / 2.25
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 87.436, 87.436, 212.955, 90.00, 90.00, 120.00
R / Rfree (%) 20.8 / 23.1

Other elements in 1mbx:

The structure of Crystal Structure Analysis of Clpsn with Transition Metal Ion Bound also contains other interesting chemical elements:

Yttrium (Y) 5 atoms
Chlorine (Cl) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure Analysis of Clpsn with Transition Metal Ion Bound (pdb code 1mbx). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure Analysis of Clpsn with Transition Metal Ion Bound, PDB code: 1mbx:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 1mbx

Go back to Zinc Binding Sites List in 1mbx
Zinc binding site 1 out of 2 in the Crystal Structure Analysis of Clpsn with Transition Metal Ion Bound


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure Analysis of Clpsn with Transition Metal Ion Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn210

b:79.5
occ:1.00
NE2 A:HIS22 2.0 50.0 1.0
OE2 A:GLU63 2.3 63.7 1.0
ND1 A:HIS20 2.4 60.2 1.0
O A:HOH214 2.4 39.0 1.0
CD2 A:HIS22 2.9 50.1 1.0
CE1 A:HIS22 3.0 49.1 1.0
CD A:GLU63 3.1 63.1 1.0
OE1 A:GLU63 3.2 63.8 1.0
CG A:HIS20 3.2 57.9 1.0
CB A:HIS20 3.3 56.0 1.0
CE1 A:HIS20 3.5 60.0 1.0
CG A:HIS22 4.1 50.1 1.0
ND1 A:HIS22 4.1 52.1 1.0
CG2 A:ILE62 4.2 47.5 1.0
CD2 A:HIS20 4.4 59.5 1.0
NE2 A:HIS29 4.5 49.7 1.0
CG A:GLU63 4.5 61.0 1.0
NE2 A:HIS20 4.5 60.7 1.0
O A:HOH256 4.8 62.2 1.0
O A:HOH255 4.8 68.6 1.0
CA A:HIS20 4.9 56.0 1.0
O A:ARG16 4.9 48.6 1.0

Zinc binding site 2 out of 2 in 1mbx

Go back to Zinc Binding Sites List in 1mbx
Zinc binding site 2 out of 2 in the Crystal Structure Analysis of Clpsn with Transition Metal Ion Bound


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure Analysis of Clpsn with Transition Metal Ion Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn211

b:56.8
occ:1.00
OE2 B:GLU63 2.1 53.1 1.0
NE2 B:HIS22 2.1 43.0 1.0
ND1 B:HIS20 2.2 54.8 1.0
O B:HOH216 2.4 23.4 1.0
CD B:GLU63 2.8 50.8 1.0
OE1 B:GLU63 2.8 53.9 1.0
CD2 B:HIS22 3.0 43.8 1.0
CE1 B:HIS20 3.1 54.2 1.0
CG B:HIS20 3.2 51.8 1.0
CE1 B:HIS22 3.2 44.5 1.0
CB B:HIS20 3.5 49.8 1.0
CG2 B:ILE62 4.0 37.8 1.0
CG B:HIS22 4.2 45.0 1.0
CG B:GLU63 4.2 49.2 1.0
ND1 B:HIS22 4.2 47.1 1.0
NE2 B:HIS20 4.2 55.7 1.0
CD2 B:HIS20 4.2 53.7 1.0
O B:HOH267 4.6 56.9 1.0
NE2 B:HIS29 4.7 41.5 1.0
O B:ARG16 4.9 47.3 1.0
CA B:HIS20 4.9 48.1 1.0
CA B:GLU63 5.0 47.5 1.0
O B:HOH278 5.0 68.9 1.0

Reference:

F.Guo, L.Esser, S.K.Singh, M.R.Maurizi, D.Xia. Crystal Structure of the Heterodimeric Complex of the Adaptor, Clps, with the N-Domain of the Aaa+ Chaperone, Clpa J.Biol.Chem. V. 277 46753 2002.
ISSN: ISSN 0021-9258
PubMed: 12235156
DOI: 10.1074/JBC.M208104200
Page generated: Wed Dec 16 02:57:00 2020

Last articles

Zn in 7RE3
Zn in 7RDX
Zn in 7RDZ
Zn in 7RWM
Zn in 7PGU
Zn in 7PGR
Zn in 7PGT
Zn in 7PGS
Zn in 7SQE
Zn in 7RWK
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy