Atomistry » Zinc » PDB 1m2k-1mkd » 1m63
Atomistry »
  Zinc »
    PDB 1m2k-1mkd »
      1m63 »

Zinc in PDB 1m63: Crystal Structure of Calcineurin-Cyclophilin-Cyclosporin Shows Common But Distinct Recognition of Immunophilin-Drug Complexes

Enzymatic activity of Crystal Structure of Calcineurin-Cyclophilin-Cyclosporin Shows Common But Distinct Recognition of Immunophilin-Drug Complexes

All present enzymatic activity of Crystal Structure of Calcineurin-Cyclophilin-Cyclosporin Shows Common But Distinct Recognition of Immunophilin-Drug Complexes:
3.1.3.16; 5.2.1.8;

Protein crystallography data

The structure of Crystal Structure of Calcineurin-Cyclophilin-Cyclosporin Shows Common But Distinct Recognition of Immunophilin-Drug Complexes, PDB code: 1m63 was solved by Q.Huai, H.-Y.Kim, Y.Liu, Y.Zhao, A.Mondragon, J.O.Liu, H.Ke, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.00 / 2.80
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 108.657, 108.657, 316.590, 90.00, 90.00, 90.00
R / Rfree (%) 26 / 32.2

Other elements in 1m63:

The structure of Crystal Structure of Calcineurin-Cyclophilin-Cyclosporin Shows Common But Distinct Recognition of Immunophilin-Drug Complexes also contains other interesting chemical elements:

Iron (Fe) 2 atoms
Calcium (Ca) 8 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Calcineurin-Cyclophilin-Cyclosporin Shows Common But Distinct Recognition of Immunophilin-Drug Complexes (pdb code 1m63). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of Calcineurin-Cyclophilin-Cyclosporin Shows Common But Distinct Recognition of Immunophilin-Drug Complexes, PDB code: 1m63:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 1m63

Go back to Zinc Binding Sites List in 1m63
Zinc binding site 1 out of 2 in the Crystal Structure of Calcineurin-Cyclophilin-Cyclosporin Shows Common But Distinct Recognition of Immunophilin-Drug Complexes


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Calcineurin-Cyclophilin-Cyclosporin Shows Common But Distinct Recognition of Immunophilin-Drug Complexes within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn504

b:52.0
occ:1.00
ND1 A:HIS281 2.2 56.1 1.0
OD1 A:ASN150 2.2 38.5 1.0
OD2 A:ASP118 2.3 48.6 1.0
NE2 A:HIS199 2.3 58.7 1.0
FE A:FE505 2.9 42.3 1.0
CE1 A:HIS281 3.0 58.6 1.0
CE1 A:HIS199 3.1 61.4 1.0
CG A:ASP118 3.2 48.0 1.0
CD2 A:HIS199 3.3 63.1 1.0
CG A:HIS281 3.4 53.2 1.0
CG A:ASN150 3.5 34.0 1.0
OD1 A:ASP118 3.5 49.1 1.0
CA A:HIS281 3.5 40.3 1.0
O A:HIS281 3.8 39.6 1.0
CB A:HIS281 3.8 43.3 1.0
OD1 A:ASP90 3.9 34.7 1.0
C A:HIS281 4.2 38.2 1.0
ND2 A:ASN150 4.2 30.0 1.0
NE2 A:HIS281 4.2 58.0 1.0
CD2 A:HIS151 4.3 33.8 1.0
ND1 A:HIS199 4.3 62.5 1.0
N A:HIS281 4.4 43.8 1.0
CD2 A:HIS281 4.4 54.6 1.0
CG A:HIS199 4.4 62.2 1.0
CB A:ASP118 4.5 43.4 1.0
CB A:ASN150 4.5 35.5 1.0
N A:ASN150 4.5 34.5 1.0
NE2 A:HIS92 4.7 35.1 1.0
CG A:ASP90 4.7 41.7 1.0
OD2 A:ASP90 4.8 53.2 1.0
NE2 A:HIS151 4.9 26.5 1.0

Zinc binding site 2 out of 2 in 1m63

Go back to Zinc Binding Sites List in 1m63
Zinc binding site 2 out of 2 in the Crystal Structure of Calcineurin-Cyclophilin-Cyclosporin Shows Common But Distinct Recognition of Immunophilin-Drug Complexes


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Calcineurin-Cyclophilin-Cyclosporin Shows Common But Distinct Recognition of Immunophilin-Drug Complexes within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Zn504

b:46.8
occ:1.00
ND1 E:HIS281 2.2 44.2 1.0
OD1 E:ASN150 2.2 47.0 1.0
NE2 E:HIS199 2.3 51.8 1.0
OD2 E:ASP118 2.3 42.4 1.0
CE1 E:HIS281 3.1 49.0 1.0
CD2 E:HIS199 3.1 49.4 1.0
FE E:FE505 3.1 55.3 1.0
CG E:ASN150 3.3 49.1 1.0
CE1 E:HIS199 3.3 53.9 1.0
CA E:HIS281 3.3 37.2 1.0
CG E:HIS281 3.3 44.8 1.0
CG E:ASP118 3.3 39.3 1.0
O E:HIS281 3.6 37.6 1.0
CB E:HIS281 3.8 42.6 1.0
ND2 E:ASN150 3.8 48.7 1.0
OD1 E:ASP118 3.8 38.6 1.0
OD1 E:ASP90 3.9 38.9 1.0
C E:HIS281 3.9 37.8 1.0
NE2 E:HIS281 4.3 47.6 1.0
CG E:HIS199 4.3 47.7 1.0
N E:HIS281 4.3 33.5 1.0
ND1 E:HIS199 4.4 51.5 1.0
CD2 E:HIS151 4.4 53.1 1.0
CD2 E:HIS281 4.4 46.0 1.0
CB E:ASN150 4.5 48.9 1.0
NH2 E:ARG254 4.5 64.7 1.0
CB E:ASP118 4.6 41.2 1.0
N E:ASN150 4.6 48.0 1.0
O E:LEU231 4.8 48.2 1.0
CG E:ASP90 4.8 37.0 1.0
OD2 E:ASP90 4.9 38.1 1.0
NE2 E:HIS151 5.0 54.9 1.0

Reference:

Q.Huai, H.-Y.Kim, Y.Liu, Y.Zhao, A.Mondragon, J.O.Liu, H.Ke. Crystal Structure of Calcineurin-Cyclophilin-Cyclosporin Shows Common But Distinct Recognition of Immunophilin-Drug Complexes Proc.Natl.Acad.Sci.Usa V. 99 12037 2002.
ISSN: ISSN 0027-8424
PubMed: 12218175
DOI: 10.1073/PNAS.192206699
Page generated: Sun Oct 13 05:25:01 2024

Last articles

Zn in 7WT5
Zn in 7WTU
Zn in 7WTV
Zn in 7WTT
Zn in 7WT4
Zn in 7WT3
Zn in 7WSS
Zn in 7WT2
Zn in 7WT0
Zn in 7WT1
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy