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Zinc in PDB 1m3v: FLIN4: Fusion of the Lim Binding Domain of LDB1 and the N- Terminal Lim Domain of LMO4

Zinc Binding Sites:

The binding sites of Zinc atom in the FLIN4: Fusion of the Lim Binding Domain of LDB1 and the N- Terminal Lim Domain of LMO4 (pdb code 1m3v). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the FLIN4: Fusion of the Lim Binding Domain of LDB1 and the N- Terminal Lim Domain of LMO4, PDB code: 1m3v:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 1m3v

Go back to Zinc Binding Sites List in 1m3v
Zinc binding site 1 out of 2 in the FLIN4: Fusion of the Lim Binding Domain of LDB1 and the N- Terminal Lim Domain of LMO4


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of FLIN4: Fusion of the Lim Binding Domain of LDB1 and the N- Terminal Lim Domain of LMO4 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn123

b:0.0
occ:1.00
ND1 A:HIS29 2.0 0.0 1.0
SG A:CYS8 2.3 0.0 1.0
SG A:CYS11 2.3 0.0 1.0
SG A:CYS32 2.3 0.0 1.0
HB2 A:HIS29 2.7 0.0 1.0
H A:CYS11 2.9 0.0 1.0
CE1 A:HIS29 3.0 0.0 1.0
CG A:HIS29 3.0 0.0 1.0
HE1 A:HIS29 3.2 0.0 1.0
HB3 A:CYS11 3.2 0.0 1.0
HB3 A:CYS8 3.3 0.0 1.0
CB A:CYS32 3.3 0.0 1.0
HB2 A:CYS32 3.3 0.0 1.0
CB A:CYS11 3.3 0.0 1.0
CB A:CYS8 3.3 0.0 1.0
CB A:HIS29 3.4 0.0 1.0
HB3 A:CYS32 3.4 0.0 1.0
N A:CYS11 3.5 0.0 1.0
H A:HIS29 3.5 0.0 1.0
HB2 A:CYS8 3.6 0.0 1.0
HA3 A:GLY10 3.8 0.0 1.0
N A:HIS29 3.8 0.0 1.0
CA A:CYS11 4.0 0.0 1.0
NE2 A:HIS29 4.1 0.0 1.0
CD2 A:HIS29 4.1 0.0 1.0
H A:GLY10 4.2 0.0 1.0
CA A:HIS29 4.2 0.0 1.0
HB3 A:HIS29 4.2 0.0 1.0
HB2 A:CYS11 4.2 0.0 1.0
C A:GLY10 4.2 0.0 1.0
HD12 A:ILE15 4.3 0.0 1.0
HA A:TRP28 4.3 0.0 1.0
CA A:GLY10 4.4 0.0 1.0
HG12 A:ILE15 4.6 0.0 1.0
H A:GLY12 4.6 0.0 1.0
C A:TRP28 4.6 0.0 1.0
N A:GLY10 4.7 0.0 1.0
CA A:CYS8 4.8 0.0 1.0
CA A:CYS32 4.8 0.0 1.0
HA A:HIS29 4.8 0.0 1.0
HA A:CYS11 4.8 0.0 1.0
C A:CYS11 5.0 0.0 1.0
HE2 A:HIS29 5.0 0.0 1.0

Zinc binding site 2 out of 2 in 1m3v

Go back to Zinc Binding Sites List in 1m3v
Zinc binding site 2 out of 2 in the FLIN4: Fusion of the Lim Binding Domain of LDB1 and the N- Terminal Lim Domain of LMO4


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of FLIN4: Fusion of the Lim Binding Domain of LDB1 and the N- Terminal Lim Domain of LMO4 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn124

b:0.0
occ:1.00
OD2 A:ASP61 2.0 0.0 1.0
SG A:CYS35 2.3 0.0 1.0
SG A:CYS58 2.3 0.0 1.0
SG A:CYS38 2.3 0.0 1.0
CG A:ASP61 2.9 0.0 1.0
HB3 A:CYS35 3.0 0.0 1.0
HB3 A:CYS58 3.1 0.0 1.0
HB2 A:CYS38 3.1 0.0 1.0
CB A:CYS35 3.2 0.0 1.0
HB2 A:ASP61 3.3 0.0 1.0
H A:CYS38 3.3 0.0 1.0
CB A:CYS38 3.3 0.0 1.0
CB A:CYS58 3.3 0.0 1.0
H A:CYS58 3.4 0.0 1.0
H A:ASP61 3.5 0.0 1.0
CB A:ASP61 3.6 0.0 1.0
HD21 A:ASN60 3.7 0.0 1.0
OD1 A:ASP61 3.7 0.0 1.0
H A:SER36 3.7 0.0 1.0
HB2 A:CYS35 4.0 0.0 1.0
HB2 A:CYS58 4.1 0.0 1.0
N A:CYS38 4.1 0.0 1.0
HB3 A:CYS38 4.1 0.0 1.0
HA A:CYS35 4.1 0.0 1.0
H A:GLN39 4.1 0.0 1.0
N A:ASP61 4.1 0.0 1.0
HB3 A:ASN60 4.1 0.0 1.0
N A:CYS58 4.2 0.0 1.0
H A:SER37 4.2 0.0 1.0
H A:ALA40 4.2 0.0 1.0
CA A:CYS38 4.3 0.0 1.0
CA A:CYS35 4.3 0.0 1.0
CA A:ASP61 4.3 0.0 1.0
CA A:CYS58 4.4 0.0 1.0
HD11 A:LEU42 4.4 0.0 1.0
HA A:ASP61 4.5 0.0 1.0
HB3 A:ASP61 4.5 0.0 1.0
ND2 A:ASN60 4.6 0.0 1.0
N A:SER36 4.6 0.0 1.0
HB3 A:ALA40 4.6 0.0 1.0
HD12 A:LEU42 4.7 0.0 1.0
N A:GLN39 4.8 0.0 1.0
HB2 A:ALA40 4.8 0.0 1.0
HA A:LEU57 5.0 0.0 1.0
N A:SER37 5.0 0.0 1.0
CD1 A:LEU42 5.0 0.0 1.0

Reference:

J.E.Deane, J.P.Mackay, A.H.Kwan, E.Y.Sum, J.E.Visvader, J.M.Matthews. Structural Basis For the Recognition of LDB1 By the N-Terminal Lim Domains of LMO2 and LMO4 Embo J. V. 22 2224 2003.
ISSN: ISSN 0261-4189
PubMed: 12727888
DOI: 10.1093/EMBOJ/CDG196
Page generated: Fri Sep 25 22:31:14 2020
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