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Zinc in PDB 1lml: Leishmanolysin

Enzymatic activity of Leishmanolysin

All present enzymatic activity of Leishmanolysin:
3.4.24.36;

Protein crystallography data

The structure of Leishmanolysin, PDB code: 1lml was solved by E.Schlagenhauf, R.Etges, P.Metcalf, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 5.00 / 1.86
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 106.325, 90.144, 70.145, 90.00, 110.54, 90.00
R / Rfree (%) 19.1 / 20.8

Zinc Binding Sites:

The binding sites of Zinc atom in the Leishmanolysin (pdb code 1lml). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Leishmanolysin, PDB code: 1lml:

Zinc binding site 1 out of 1 in 1lml

Go back to Zinc Binding Sites List in 1lml
Zinc binding site 1 out of 1 in the Leishmanolysin


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Leishmanolysin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn578

b:16.1
occ:1.00
NE2 A:HIS268 2.3 10.4 1.0
NE2 A:HIS334 2.3 15.2 1.0
NE2 A:HIS264 2.4 12.3 1.0
O A:HOH663 2.4 24.4 1.0
CD2 A:HIS334 3.0 16.2 1.0
CD2 A:HIS264 3.1 10.3 1.0
CD2 A:HIS268 3.2 10.3 1.0
CE1 A:HIS268 3.3 9.9 1.0
CE1 A:HIS334 3.5 18.2 1.0
CE1 A:HIS264 3.5 15.0 1.0
OE2 A:GLU265 3.5 15.5 1.0
CG A:HIS334 4.2 16.0 1.0
CG A:HIS264 4.3 11.5 1.0
CG A:HIS268 4.3 10.2 1.0
ND1 A:HIS268 4.4 11.9 1.0
ND1 A:HIS334 4.4 16.6 1.0
ND1 A:HIS264 4.5 14.1 1.0
CD A:GLU265 4.5 11.6 1.0
O A:HOH668 4.7 31.0 1.0
CE A:MET345 4.8 11.5 1.0
O A:HOH616 4.8 22.6 1.0
OE1 A:GLU265 4.9 12.4 1.0

Reference:

E.Schlagenhauf, R.Etges, P.Metcalf. The Crystal Structure of the Leishmania Major Surface Proteinase Leishmanolysin (GP63). Structure V. 6 1035 1998.
ISSN: ISSN 0969-2126
PubMed: 9739094
DOI: 10.1016/S0969-2126(98)00104-X
Page generated: Wed Dec 16 02:56:24 2020

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