Zinc in PDB 1lmh: Crystal Structure of S. Aureus Peptide Deformylase

All present enzymatic activity of Crystal Structure of S. Aureus Peptide Deformylase:
3.5.1.27;

The structure of Crystal Structure of S. Aureus Peptide Deformylase, PDB code: 1lmh was solved by E.T.Baldwin, M.S.Harris, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	9.99 / 1.90
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	94.131, 121.873, 47.579, 90.00, 90.00, 90.00
R / Rfree (%)	n/a / n/a

The binding sites of Zinc atom in the Crystal Structure of S. Aureus Peptide Deformylase (pdb code 1lmh). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of S. Aureus Peptide Deformylase, PDB code: 1lmh:

Zinc binding site 1 out of 1 in the Crystal Structure of S. Aureus Peptide Deformylase


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of S. Aureus Peptide Deformylase within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn185 b:21.2 occ:1.00 NE2 A:HIS158 2.3 9.3 1.0 NE2 A:HIS154 2.3 9.6 1.0 O A:HOH186 2.3 8.2 1.0 O A:HOH281 2.4 22.9 1.0 SG A:CYS111 2.5 12.6 1.0 CD2 A:HIS154 3.1 9.2 1.0 CD2 A:HIS158 3.2 9.3 1.0 CE1 A:HIS158 3.3 9.3 1.0 CB A:CYS111 3.4 13.4 1.0 CE1 A:HIS154 3.4 9.8 1.0 O A:HOH234 3.5 17.6 1.0 NE2 A:GLN65 3.6 10.9 1.0 O A:HOH263 3.7 9.9 1.0 CA A:CYS111 3.9 13.4 1.0 OE1 A:GLN65 4.0 10.9 1.0 CD A:GLN65 4.0 11.4 1.0 OE2 A:GLU155 4.1 10.6 1.0 CG A:HIS154 4.3 8.6 1.0 CG A:HIS158 4.4 9.2 1.0 O A:HOH420 4.4 29.7 1.0 ND1 A:HIS158 4.4 9.1 1.0 ND1 A:HIS154 4.4 9.2 1.0 O A:GLY110 4.4 13.2 1.0 O A:HOH207 4.6 11.6 1.0 OE1 A:GLU155 4.6 10.6 1.0 N A:LEU112 4.7 14.2 1.0 CD A:GLU155 4.7 10.1 1.0 C A:CYS111 4.8 13.7 1.0

E.T.Baldwin, M.S.Harris, A.W.Yem, C.L.Wolfe, A.F.Vosters, K.A.Curry, R.W.Murray, J.H.Bock, V.P.Marshall, J.I.Cialdella, M.H.Merchant, G.Choi, M.R.Deibel Jr.. Crystal Structure of Type II Peptide Deformylase From Staphylococcus Aureus J.Biol.Chem. V. 277 31163 2002.
ISSN: ISSN 0021-9258
PubMed: 12048187
DOI: 10.1074/JBC.M202750200