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Zinc in PDB 1jxp: Bk Strain Hepatitis C Virus (Hcv) NS3-NS4A

Protein crystallography data

The structure of Bk Strain Hepatitis C Virus (Hcv) NS3-NS4A, PDB code: 1jxp was solved by Y.Yan, S.Munshi, Z.Chen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) N/A / 2.20
Space group P 63 2 2
Cell size a, b, c (Å), α, β, γ (°) 96.960, 96.960, 167.100, 90.00, 90.00, 120.00
R / Rfree (%) 24.5 / n/a

Zinc Binding Sites:

The binding sites of Zinc atom in the Bk Strain Hepatitis C Virus (Hcv) NS3-NS4A (pdb code 1jxp). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Bk Strain Hepatitis C Virus (Hcv) NS3-NS4A, PDB code: 1jxp:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 1jxp

Go back to Zinc Binding Sites List in 1jxp
Zinc binding site 1 out of 2 in the Bk Strain Hepatitis C Virus (Hcv) NS3-NS4A


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Bk Strain Hepatitis C Virus (Hcv) NS3-NS4A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn190

b:80.6
occ:1.00
SG A:CYS145 1.8 68.7 1.0
SG A:CYS97 2.3 77.5 1.0
O A:HOH653 2.3 45.0 1.0
SG A:CYS99 2.5 73.1 1.0
CB A:CYS145 3.0 59.4 1.0
CB A:CYS97 3.3 71.1 1.0
CB A:CYS99 3.5 63.5 1.0
OG A:SER101 3.7 61.9 1.0
CA A:CYS97 3.7 64.7 1.0
ND1 A:HIS149 3.9 77.8 1.0
C A:CYS97 4.0 65.1 1.0
O A:CYS97 4.0 61.8 1.0
CB A:HIS149 4.2 69.0 1.0
CA A:CYS145 4.4 61.3 1.0
N A:CYS99 4.4 66.2 1.0
CG A:HIS149 4.5 75.1 1.0
CA A:CYS99 4.5 63.4 1.0
N A:THR98 4.6 67.7 1.0
C A:CYS145 4.7 62.9 1.0
OG A:SER147 4.8 62.0 1.0
CB A:SER147 4.8 63.5 1.0
N A:CYS145 4.9 59.3 1.0
O A:CYS145 4.9 61.0 1.0
CE1 A:HIS149 4.9 79.8 1.0
C A:THR98 5.0 68.4 1.0

Zinc binding site 2 out of 2 in 1jxp

Go back to Zinc Binding Sites List in 1jxp
Zinc binding site 2 out of 2 in the Bk Strain Hepatitis C Virus (Hcv) NS3-NS4A


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Bk Strain Hepatitis C Virus (Hcv) NS3-NS4A within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn490

b:79.1
occ:1.00
O B:THR98 2.4 82.9 1.0
SG B:CYS97 2.5 67.2 1.0
SG B:CYS99 2.6 83.1 1.0
SG B:CYS145 2.6 70.5 1.0
CB B:CYS99 2.6 81.7 1.0
O B:CYS97 2.6 68.3 1.0
O B:HOH876 2.8 35.8 1.0
C B:THR98 3.1 78.4 1.0
C B:CYS97 3.2 68.9 1.0
CB B:CYS145 3.2 67.5 1.0
CA B:CYS99 3.7 81.9 1.0
N B:CYS99 3.8 80.1 1.0
CA B:CYS97 3.8 66.7 1.0
N B:THR98 3.8 70.7 1.0
CB B:CYS97 3.9 66.8 1.0
CB B:HIS149 4.1 65.2 1.0
CA B:THR98 4.1 73.4 1.0
ND1 B:HIS149 4.3 67.7 1.0
OG B:SER147 4.3 67.4 1.0
CG B:HIS149 4.6 69.1 1.0
CA B:CYS145 4.7 64.5 1.0
CB B:THR98 4.7 69.8 1.0
C B:CYS99 4.8 83.7 1.0
N B:GLY100 4.8 84.6 1.0

Reference:

Y.Yan, Y.Li, S.Munshi, V.Sardana, J.L.Cole, M.Sardana, C.Steinkuehler, L.Tomei, R.De Francesco, L.C.Kuo, Z.Chen. Complex of NS3 Protease and NS4A Peptide of Bk Strain Hepatitis C Virus: A 2.2 A Resolution Structure in A Hexagonal Crystal Form. Protein Sci. V. 7 837 1998.
ISSN: ISSN 0961-8368
PubMed: 9568891
Page generated: Wed Dec 16 02:54:11 2020

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