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Zinc in PDB 1jvb: Alcohol Dehydrogenase From the Archaeon Sulfolobus Solfataricus

Enzymatic activity of Alcohol Dehydrogenase From the Archaeon Sulfolobus Solfataricus

All present enzymatic activity of Alcohol Dehydrogenase From the Archaeon Sulfolobus Solfataricus:
1.1.1.1;

Protein crystallography data

The structure of Alcohol Dehydrogenase From the Archaeon Sulfolobus Solfataricus, PDB code: 1jvb was solved by L.Esposito, F.Sica, A.Zagari, L.Mazzarella, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.00 / 1.85
Space group I 41 2 2
Cell size a, b, c (Å), α, β, γ (°) 125.316, 125.316, 115.590, 90.00, 90.00, 90.00
R / Rfree (%) 19.1 / 22

Zinc Binding Sites:

The binding sites of Zinc atom in the Alcohol Dehydrogenase From the Archaeon Sulfolobus Solfataricus (pdb code 1jvb). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Alcohol Dehydrogenase From the Archaeon Sulfolobus Solfataricus, PDB code: 1jvb:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 1jvb

Go back to Zinc Binding Sites List in 1jvb
Zinc binding site 1 out of 2 in the Alcohol Dehydrogenase From the Archaeon Sulfolobus Solfataricus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Alcohol Dehydrogenase From the Archaeon Sulfolobus Solfataricus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn400

b:25.2
occ:1.00
OE2 A:GLU98 2.0 24.8 1.0
SG A:CYS104 2.2 25.4 1.0
SG A:CYS101 2.3 24.4 1.0
SG A:CYS112 2.3 23.8 1.0
CD A:GLU98 3.1 28.6 1.0
CB A:CYS112 3.1 24.5 1.0
CB A:CYS104 3.4 22.6 1.0
CB A:CYS101 3.4 23.6 1.0
CG A:GLU98 3.5 28.7 1.0
CA A:CYS112 3.5 23.5 1.0
N A:CYS101 3.8 23.7 1.0
N A:ASP113 3.9 24.3 1.0
N A:GLU98 3.9 25.8 1.0
N A:GLY99 4.0 26.6 1.0
N A:CYS104 4.0 21.7 1.0
CA A:CYS101 4.1 22.4 1.0
C A:CYS112 4.2 25.2 1.0
OE1 A:GLU98 4.2 24.8 1.0
CA A:CYS104 4.3 20.1 1.0
CA A:GLY97 4.6 21.9 1.0
CA A:GLU98 4.6 28.5 1.0
CB A:GLU98 4.7 26.1 1.0
C A:CYS101 4.7 20.6 1.0
N A:ASN100 4.7 23.9 1.0
O A:CYS101 4.7 21.0 1.0
C A:GLY97 4.7 25.6 1.0
C A:GLU98 4.7 29.0 1.0
N A:CYS112 4.8 23.4 1.0
CA A:GLY99 4.8 26.9 1.0
N A:SER114 4.8 25.1 1.0
C A:GLY99 4.9 25.7 1.0
O A:HOH546 5.0 37.8 1.0

Zinc binding site 2 out of 2 in 1jvb

Go back to Zinc Binding Sites List in 1jvb
Zinc binding site 2 out of 2 in the Alcohol Dehydrogenase From the Archaeon Sulfolobus Solfataricus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Alcohol Dehydrogenase From the Archaeon Sulfolobus Solfataricus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn500

b:27.7
occ:1.00
OE2 A:GLU69 2.0 26.6 1.0
NE2 A:HIS68 2.0 25.5 1.0
SG A:CYS154 2.3 28.2 1.0
SG A:CYS38 2.3 27.6 1.0
CD2 A:HIS68 3.0 23.8 1.0
CD A:GLU69 3.0 28.0 1.0
CB A:CYS154 3.1 27.6 1.0
CE1 A:HIS68 3.1 26.9 1.0
CB A:CYS38 3.3 29.1 1.0
CG A:GLU69 3.4 27.6 1.0
O A:HOH688 4.0 19.5 0.5
O A:HOH597 4.1 45.1 1.0
CG A:HIS68 4.2 25.1 1.0
OE1 A:GLU69 4.2 27.3 1.0
ND1 A:HIS68 4.2 25.6 1.0
O A:HOH654 4.5 45.4 1.0
CA A:CYS38 4.5 28.1 1.0
N A:CYS38 4.6 27.5 1.0
CA A:CYS154 4.6 25.1 1.0
OG A:SER40 4.6 32.1 1.0
CB A:SER40 4.7 31.1 1.0
NH1 A:ARG342 4.7 35.1 1.0
O A:HOH518 4.9 28.8 1.0
CB A:GLU69 4.9 25.3 1.0

Reference:

L.Esposito, F.Sica, C.A.Raia, A.Giordano, M.Rossi, L.Mazzarella, A.Zagari. Crystal Structure of the Alcohol Dehydrogenase From the Hyperthermophilic Archaeon Sulfolobus Solfataricus at 1.85 A Resolution. J.Mol.Biol. V. 318 463 2002.
ISSN: ISSN 0022-2836
PubMed: 12051852
DOI: 10.1016/S0022-2836(02)00088-8
Page generated: Wed Dec 16 02:54:10 2020

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