Zinc in PDB 1jod: Crystal Structure of Murine Olfactory Marker Protein in Spacegroup P43212

The structure of Crystal Structure of Murine Olfactory Marker Protein in Spacegroup P43212, PDB code: 1jod was solved by P.Smith, J.F.Hunt, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.00 / 3.20
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	89.128, 89.128, 158.982, 90.00, 90.00, 90.00
R / Rfree (%)	25.6 / 32.6

The structure of Crystal Structure of Murine Olfactory Marker Protein in Spacegroup P43212 also contains other interesting chemical elements:

Arsenic

(As)

4 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 22;

Binding sites:

The binding sites of Zinc atom in the Crystal Structure of Murine Olfactory Marker Protein in Spacegroup P43212 (pdb code 1jod). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 22 binding sites of Zinc where determined in the Crystal Structure of Murine Olfactory Marker Protein in Spacegroup P43212, PDB code: 1jod:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Zinc binding site 1 out of 22 in the Crystal Structure of Murine Olfactory Marker Protein in Spacegroup P43212


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Murine Olfactory Marker Protein in Spacegroup P43212 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn301 b:41.6 occ:1.00 OD2 A:ASP221 2.1 34.5 1.0 O A:HOH524 2.5 1.3 1.0 CG A:ASP221 3.0 22.2 1.0 OD1 A:ASP221 3.1 13.3 1.0 ZN A:ZN313 4.3 0.4 1.0 CB A:ASP221 4.4 17.2 1.0

Zinc binding site 2 out of 22 in the Crystal Structure of Murine Olfactory Marker Protein in Spacegroup P43212


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Murine Olfactory Marker Protein in Spacegroup P43212 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn302 b:69.3 occ:1.00 OE1 A:GLU143 3.2 19.9 1.0 O A:LYS144 3.3 24.8 1.0 OD1 A:ASN193 3.4 21.3 1.0 CD2 A:LEU145 3.9 14.9 1.0 CG A:ARG128 3.9 17.0 1.0 CD A:GLU143 3.9 9.7 1.0 CA A:LEU145 4.2 31.2 1.0 C A:LYS144 4.2 22.8 1.0 CG A:GLU143 4.4 10.1 1.0 CB A:ARG128 4.4 14.1 1.0 N A:ILE146 4.5 28.2 1.0 SE A:MSE125 4.5 33.7 1.0 CG A:ASN193 4.5 21.8 1.0 O A:MSE125 4.6 30.2 1.0 CG A:LEU145 4.6 21.2 1.0 N A:LEU145 4.6 22.5 1.0 CD A:ARG128 4.7 23.8 1.0 CB A:MSE125 4.7 30.4 1.0 CA A:MSE125 4.7 27.5 1.0 OE2 A:GLU143 4.8 15.4 1.0 CG A:MSE125 4.9 38.2 1.0 NE A:ARG128 4.9 33.6 1.0 C A:LEU145 4.9 29.3 1.0 CB A:LEU145 4.9 26.7 1.0 O A:LEU194 5.0 1.3 1.0

Zinc binding site 3 out of 22 in the Crystal Structure of Murine Olfactory Marker Protein in Spacegroup P43212


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of Murine Olfactory Marker Protein in Spacegroup P43212 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn303 b:49.5 occ:1.00 O2 A:CAC351 1.5 13.0 1.0 OD1 A:ASP190 1.7 47.0 1.0 OE2 B:GLU1247 1.9 38.9 1.0 CD B:GLU1247 2.7 45.3 1.0 CG A:ASP190 2.7 30.3 1.0 OE1 B:GLU1247 2.8 38.1 1.0 AS A:CAC351 3.0 33.1 1.0 ZN B:ZN322 3.1 47.5 1.0 OD2 A:ASP190 3.2 13.1 1.0 C1 A:CAC351 3.7 23.2 1.0 CB A:ASP190 4.0 20.7 1.0 CG A:PRO189 4.0 23.5 1.0 CG B:GLU1247 4.1 38.8 1.0 N A:ASP190 4.2 17.7 1.0 O1 A:CAC351 4.2 25.7 1.0 CA A:ASP190 4.2 18.1 1.0 C2 A:CAC351 4.4 24.7 1.0 C A:PRO189 4.6 23.0 1.0 OH A:TYR240 4.7 28.6 1.0 N B:GLU1247 4.8 43.8 1.0 CB A:PRO189 4.9 16.6 1.0 CD A:PRO189 4.9 32.0 1.0 O A:PRO189 5.0 33.2 1.0

Zinc binding site 4 out of 22 in the Crystal Structure of Murine Olfactory Marker Protein in Spacegroup P43212


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Crystal Structure of Murine Olfactory Marker Protein in Spacegroup P43212 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn304 b:45.0 occ:1.00 O1 A:CAC351 2.1 25.7 1.0 OD2 A:ASP120 2.4 31.6 1.0 OD1 A:ASP120 2.7 32.2 1.0 CG A:ASP120 2.9 35.6 1.0 OD2 A:ASP118 3.0 38.9 1.0 OD1 A:ASP118 3.4 18.9 1.0 CG A:ASP118 3.5 26.7 1.0 AS A:CAC351 3.9 33.1 1.0 NH1 A:ARG154 4.2 57.7 1.0 CB A:ASP120 4.4 21.4 1.0 OH A:TYR240 4.6 28.6 1.0 C2 A:CAC351 4.7 24.7 1.0 CB A:ASP118 4.8 25.1 1.0 C1 A:CAC351 4.8 23.2 1.0 CD A:ARG154 4.9 52.2 1.0 N A:LEU121 5.0 20.1 1.0

Zinc binding site 5 out of 22 in the Crystal Structure of Murine Olfactory Marker Protein in Spacegroup P43212


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Crystal Structure of Murine Olfactory Marker Protein in Spacegroup P43212 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn305 b:30.6 occ:1.00 OD1 A:ASP216 2.2 18.3 1.0 CG A:ASP216 2.9 29.7 1.0 OD2 A:ASP216 2.9 35.4 1.0 OE2 A:GLU219 3.2 21.5 1.0 O A:TRP217 3.4 12.4 1.0 OE1 A:GLU219 3.5 16.3 1.0 CD A:GLU219 3.7 24.0 1.0 N A:TRP217 4.2 17.2 1.0 CB A:ASP216 4.3 22.5 1.0 C A:TRP217 4.5 12.0 1.0 CZ2 A:TRP207 4.6 33.3 1.0 CH2 A:TRP207 4.8 26.3 1.0 CA A:ASP216 4.8 17.7 1.0

Zinc binding site 6 out of 22 in the Crystal Structure of Murine Olfactory Marker Protein in Spacegroup P43212


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Crystal Structure of Murine Olfactory Marker Protein in Spacegroup P43212 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn311 b:78.3 occ:1.00 O2 A:CAC352 1.5 46.7 1.0 AS A:CAC352 2.6 41.0 1.0 OD1 A:ASP104 3.1 39.3 1.0 C2 A:CAC352 3.3 45.3 1.0 O1 A:CAC352 3.6 33.0 1.0 O A:PHE165 3.6 18.9 1.0 NE2 A:GLN164 3.7 44.0 1.0 ND2 A:ASN261 3.8 21.9 1.0 CA A:ASP166 3.8 15.8 1.0 O A:ASP166 4.0 32.3 1.0 CG A:ASP104 4.1 45.3 1.0 OD2 A:ASP166 4.1 17.1 1.0 OD2 A:ASP104 4.2 42.5 1.0 CG A:ASP166 4.3 18.1 1.0 C1 A:CAC352 4.4 47.5 1.0 C A:ASP166 4.4 20.0 1.0 CB A:ASP166 4.5 11.9 1.0 C A:PHE165 4.5 15.4 1.0 N A:ASP166 4.7 11.3 1.0 CD A:GLN164 4.9 37.4 1.0 OD1 A:ASP166 4.9 13.9 1.0

Zinc binding site 7 out of 22 in the Crystal Structure of Murine Olfactory Marker Protein in Spacegroup P43212


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of Crystal Structure of Murine Olfactory Marker Protein in Spacegroup P43212 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn313 b:0.4 occ:1.00 OD1 A:ASP201 3.2 31.5 1.0 CG A:ASP201 4.0 25.2 1.0 OD2 A:ASP201 4.2 19.5 1.0 ZN A:ZN301 4.3 41.6 1.0 CB A:PRO202 4.8 27.5 1.0

Zinc binding site 8 out of 22 in the Crystal Structure of Murine Olfactory Marker Protein in Spacegroup P43212


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 8 of Crystal Structure of Murine Olfactory Marker Protein in Spacegroup P43212 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn314 b:34.8 occ:1.00 O2 A:CAC354 1.5 32.7 1.0 OE2 A:GLU247 2.3 35.9 1.0 O A:HOH522 2.5 1.3 1.0 CD A:GLU247 3.0 37.6 1.0 AS A:CAC354 3.1 51.8 1.0 OE1 A:GLU247 3.1 34.5 1.0 ZN A:ZN315 3.6 45.3 1.0 C1 A:CAC354 3.8 45.2 1.0 C2 A:CAC354 4.2 34.7 1.0 CG A:GLU247 4.5 38.0 1.0 O1 A:CAC354 4.6 50.1 1.0 N A:GLU247 4.7 39.5 1.0 CA A:GLY246 4.8 40.2 1.0

Zinc binding site 9 out of 22 in the Crystal Structure of Murine Olfactory Marker Protein in Spacegroup P43212


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 9 of Crystal Structure of Murine Olfactory Marker Protein in Spacegroup P43212 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn315 b:45.3 occ:1.00 O2 A:CAC354 2.7 32.7 1.0 OE2 A:GLU247 2.9 35.9 1.0 ZN A:ZN314 3.6 34.8 1.0 AS A:CAC354 3.9 51.8 1.0 CD A:GLU247 4.0 37.6 1.0 O1 A:CAC354 4.1 50.1 1.0 O A:PHE245 4.3 23.6 1.0 CA A:GLY246 4.5 40.2 1.0 CG A:GLU247 4.5 38.0 1.0 C A:GLY246 4.7 39.9 1.0 N A:GLU247 4.8 39.5 1.0

Zinc binding site 10 out of 22 in the Crystal Structure of Murine Olfactory Marker Protein in Spacegroup P43212


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 10 of Crystal Structure of Murine Olfactory Marker Protein in Spacegroup P43212 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn316 b:88.5 occ:1.00 O A:HOH522 4.3 1.3 1.0 CD A:LYS177 4.8 15.8 1.0

P.C.Smith, S.Firestein, J.F.Hunt. The Crystal Structure of the Olfactory Marker Protein at 2.3 A Resolution. J.Mol.Biol. V. 319 807 2002.
ISSN: ISSN 0022-2836
PubMed: 12054872
DOI: 10.1016/S0022-2836(02)00242-5