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Zinc in PDB 1jm7: Solution Structure of the BRCA1/BARD1 Ring-Domain Heterodimer

Zinc Binding Sites:

The binding sites of Zinc atom in the Solution Structure of the BRCA1/BARD1 Ring-Domain Heterodimer (pdb code 1jm7). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Solution Structure of the BRCA1/BARD1 Ring-Domain Heterodimer, PDB code: 1jm7:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in 1jm7

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Zinc binding site 1 out of 4 in the Solution Structure of the BRCA1/BARD1 Ring-Domain Heterodimer


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of the BRCA1/BARD1 Ring-Domain Heterodimer within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn123

b:0.0
occ:1.00
HD13 A:ILE26 2.2 0.0 1.0
SG A:CYS24 2.4 0.0 1.0
SG A:CYS44 2.4 0.0 1.0
SG A:CYS47 2.4 0.0 1.0
SG A:CYS27 2.4 0.0 1.0
CD1 A:ILE26 3.2 0.0 1.0
HB2 A:CYS44 3.3 0.0 1.0
HG13 A:ILE26 3.4 0.0 1.0
H A:CYS27 3.5 0.0 1.0
CB A:CYS44 3.5 0.0 1.0
HB2 A:GLU29 3.6 0.0 1.0
HD11 A:ILE26 3.6 0.0 1.0
CG1 A:ILE26 3.8 0.0 1.0
HD12 A:ILE26 3.9 0.0 1.0
CB A:CYS27 3.9 0.0 1.0
H A:GLU29 3.9 0.0 1.0
HB3 A:CYS27 3.9 0.0 1.0
CB A:CYS24 3.9 0.0 1.0
H A:CYS44 4.0 0.0 1.0
HB2 A:CYS24 4.0 0.0 1.0
HG12 A:ILE26 4.1 0.0 1.0
CB A:CYS47 4.1 0.0 1.0
HB3 A:CYS44 4.2 0.0 1.0
O A:GLU29 4.2 0.0 1.0
HB3 A:CYS47 4.2 0.0 1.0
N A:CYS27 4.3 0.0 1.0
HB3 A:CYS24 4.3 0.0 1.0
HG23 A:ILE31 4.4 0.0 1.0
HD2 A:PRO25 4.4 0.0 1.0
HG21 A:ILE31 4.5 0.0 1.0
N A:CYS44 4.5 0.0 1.0
HB2 A:CYS47 4.5 0.0 1.0
CA A:CYS27 4.6 0.0 1.0
CB A:GLU29 4.6 0.0 1.0
HB2 A:CYS27 4.7 0.0 1.0
CA A:CYS44 4.7 0.0 1.0
H A:ILE26 4.7 0.0 1.0
N A:GLU29 4.7 0.0 1.0
H A:LEU28 4.8 0.0 1.0
HG3 A:GLU29 4.8 0.0 1.0
HA A:ILE31 4.8 0.0 1.0
H A:CYS47 4.9 0.0 1.0
HD2 A:PHE43 4.9 0.0 1.0
CG2 A:ILE31 5.0 0.0 1.0

Zinc binding site 2 out of 4 in 1jm7

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Zinc binding site 2 out of 4 in the Solution Structure of the BRCA1/BARD1 Ring-Domain Heterodimer


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of the BRCA1/BARD1 Ring-Domain Heterodimer within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn124

b:0.0
occ:1.00
HD2 A:HIS41 2.0 0.0 1.0
SG A:CYS39 2.4 0.0 1.0
SG A:CYS64 2.4 0.0 1.0
SG A:CYS61 2.4 0.0 1.0
CD2 A:HIS41 2.4 0.0 1.0
NE2 A:HIS41 2.4 0.0 1.0
HB2 A:LEU63 2.7 0.0 1.0
HB3 A:CYS39 3.1 0.0 1.0
HB3 A:CYS64 3.2 0.0 1.0
H A:CYS64 3.3 0.0 1.0
CB A:CYS39 3.3 0.0 1.0
CB A:CYS64 3.4 0.0 1.0
HB3 A:CYS61 3.5 0.0 1.0
CB A:CYS61 3.6 0.0 1.0
N A:CYS64 3.6 0.0 1.0
HD12 A:LEU63 3.7 0.0 1.0
CG A:HIS41 3.7 0.0 1.0
CE1 A:HIS41 3.7 0.0 1.0
CB A:LEU63 3.7 0.0 1.0
HB2 A:CYS39 3.8 0.0 1.0
HB3 A:LEU63 4.0 0.0 1.0
HB2 A:CYS61 4.0 0.0 1.0
O A:CYS39 4.1 0.0 1.0
CA A:CYS64 4.1 0.0 1.0
C A:LEU63 4.2 0.0 1.0
HB2 A:CYS64 4.3 0.0 1.0
H A:LEU63 4.3 0.0 1.0
ND1 A:HIS41 4.3 0.0 1.0
HE1 A:HIS41 4.4 0.0 1.0
CD1 A:LEU63 4.4 0.0 1.0
CA A:LEU63 4.5 0.0 1.0
HB2 A:HIS41 4.5 0.0 1.0
H A:LYS65 4.5 0.0 1.0
HD13 A:LEU63 4.5 0.0 1.0
CA A:CYS39 4.6 0.0 1.0
CG A:LEU63 4.7 0.0 1.0
N A:LEU63 4.7 0.0 1.0
CB A:HIS41 4.8 0.0 1.0
HA A:CYS64 4.8 0.0 1.0
C A:CYS39 4.8 0.0 1.0
O A:ASN66 4.9 0.0 1.0
CA A:CYS61 4.9 0.0 1.0

Zinc binding site 3 out of 4 in 1jm7

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Zinc binding site 3 out of 4 in the Solution Structure of the BRCA1/BARD1 Ring-Domain Heterodimer


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Solution Structure of the BRCA1/BARD1 Ring-Domain Heterodimer within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn143

b:0.0
occ:1.00
SG B:CYS71 2.4 0.0 1.0
SG B:CYS53 2.4 0.0 1.0
SG B:CYS74 2.4 0.0 1.0
SG B:CYS50 2.4 0.0 1.0
H B:CYS71 2.5 0.0 1.0
H B:CYS53 2.8 0.0 1.0
HB2 B:ARG52 2.8 0.0 1.0
HB2 B:CYS71 3.0 0.0 1.0
HB2 B:CYS74 3.1 0.0 1.0
CB B:CYS71 3.2 0.0 1.0
CB B:CYS74 3.3 0.0 1.0
N B:CYS71 3.4 0.0 1.0
HB3 B:CYS74 3.6 0.0 1.0
N B:CYS53 3.6 0.0 1.0
HB3 B:PHE70 3.7 0.0 1.0
CB B:CYS53 3.7 0.0 1.0
CB B:CYS50 3.7 0.0 1.0
HB2 B:CYS53 3.7 0.0 1.0
HB3 B:CYS50 3.8 0.0 1.0
HB2 B:CYS50 3.8 0.0 1.0
CB B:ARG52 3.9 0.0 1.0
CA B:CYS71 3.9 0.0 1.0
H B:ARG52 3.9 0.0 1.0
HG2 B:ARG52 4.1 0.0 1.0
HB3 B:CYS71 4.1 0.0 1.0
HG3 B:ARG52 4.2 0.0 1.0
HA B:PHE70 4.2 0.0 1.0
CA B:CYS53 4.3 0.0 1.0
CG B:ARG52 4.3 0.0 1.0
C B:PHE70 4.5 0.0 1.0
CB B:PHE70 4.5 0.0 1.0
HB3 B:ARG52 4.5 0.0 1.0
HD23 B:LEU57 4.5 0.0 1.0
C B:ARG52 4.5 0.0 1.0
HB3 B:CYS53 4.5 0.0 1.0
CA B:ARG52 4.6 0.0 1.0
N B:ARG52 4.6 0.0 1.0
CA B:PHE70 4.6 0.0 1.0
HB3 B:LEU57 4.7 0.0 1.0
HA B:CYS71 4.7 0.0 1.0
CA B:CYS74 4.7 0.0 1.0
HB2 B:PHE70 4.7 0.0 1.0
HA B:CYS53 4.8 0.0 1.0
C B:CYS71 4.9 0.0 1.0
H B:CYS74 5.0 0.0 1.0
N B:CYS74 5.0 0.0 1.0
H B:SER51 5.0 0.0 1.0

Zinc binding site 4 out of 4 in 1jm7

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Zinc binding site 4 out of 4 in the Solution Structure of the BRCA1/BARD1 Ring-Domain Heterodimer


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Solution Structure of the BRCA1/BARD1 Ring-Domain Heterodimer within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn144

b:0.0
occ:1.00
HB2 B:CYS86 1.7 0.0 1.0
HB2 B:HIS68 2.4 0.0 1.0
CB B:CYS86 2.4 0.0 1.0
SG B:CYS86 2.4 0.0 1.0
SG B:CYS66 2.4 0.0 1.0
SG B:CYS83 2.4 0.0 1.0
ND1 B:HIS68 2.6 0.0 1.0
H B:CYS86 2.7 0.0 1.0
CG B:HIS68 3.1 0.0 1.0
HB3 B:CYS86 3.1 0.0 1.0
CB B:HIS68 3.2 0.0 1.0
HB3 B:CYS83 3.2 0.0 1.0
CB B:CYS83 3.2 0.0 1.0
HB2 B:CYS83 3.2 0.0 1.0
H B:GLU67 3.3 0.0 1.0
N B:CYS86 3.4 0.0 1.0
CA B:CYS86 3.5 0.0 1.0
CE1 B:HIS68 3.5 0.0 1.0
H B:HIS68 3.6 0.0 1.0
HB2 B:CYS66 3.8 0.0 1.0
HB3 B:HIS68 3.9 0.0 1.0
HB B:VAL85 3.9 0.0 1.0
CB B:CYS66 3.9 0.0 1.0
N B:HIS68 4.0 0.0 1.0
HE1 B:HIS68 4.0 0.0 1.0
HG1 B:THR88 4.0 0.0 1.0
HB B:THR88 4.0 0.0 1.0
H B:THR88 4.1 0.0 1.0
CD2 B:HIS68 4.1 0.0 1.0
CA B:HIS68 4.2 0.0 1.0
HA B:CYS86 4.2 0.0 1.0
N B:GLU67 4.3 0.0 1.0
NE2 B:HIS68 4.4 0.0 1.0
OG1 B:THR88 4.4 0.0 1.0
H B:TYR87 4.4 0.0 1.0
C B:CYS86 4.4 0.0 1.0
H B:VAL85 4.4 0.0 1.0
HB3 B:CYS66 4.5 0.0 1.0
H B:CYS66 4.6 0.0 1.0
HZ B:PHE70 4.6 0.0 1.0
C B:VAL85 4.7 0.0 1.0
HA2 B:GLY64 4.7 0.0 1.0
CA B:CYS83 4.7 0.0 1.0
C B:GLU67 4.7 0.0 1.0
N B:TYR87 4.7 0.0 1.0
CB B:THR88 4.7 0.0 1.0
HA B:HIS68 4.8 0.0 1.0
HA3 B:GLY64 4.8 0.0 1.0
CB B:VAL85 4.9 0.0 1.0
HD2 B:HIS68 4.9 0.0 1.0
CA B:CYS66 4.9 0.0 1.0

Reference:

P.S.Brzovic, P.Rajagopal, D.W.Hoyt, M.C.King, R.E.Klevit. Structure of A BRCA1-BARD1 Heterodimeric Ring-Ring Complex. Nat.Struct.Biol. V. 8 833 2001.
ISSN: ISSN 1072-8368
PubMed: 11573085
DOI: 10.1038/NSB1001-833
Page generated: Wed Dec 16 02:54:02 2020

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