Zinc in PDB 1jd5: Crystal Structure of DIAP1-BIR2/Grim

The structure of Crystal Structure of DIAP1-BIR2/Grim, PDB code: 1jd5 was solved by J.W.Wu, A.E.Cocina, J.Chai, B.A.Hay, Y.Shi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 1.90
Space group	P 65 2 2
Cell size a, b, c (Å), α, β, γ (°)	62.700, 62.700, 130.700, 90.00, 90.00, 120.00
R / Rfree (%)	20.2 / 24.3

The binding sites of Zinc atom in the Crystal Structure of DIAP1-BIR2/Grim (pdb code 1jd5). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of DIAP1-BIR2/Grim, PDB code: 1jd5:

Zinc binding site 1 out of 1 in the Crystal Structure of DIAP1-BIR2/Grim


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of DIAP1-BIR2/Grim within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn501 b:11.1 occ:1.00 SG A:CYS290 2.3 6.9 1.0 SG A:CYS263 2.3 7.6 1.0 SG A:CYS266 2.3 9.4 1.0 NE2 A:HIS283 2.4 11.0 1.0 CE1 A:HIS283 3.1 10.3 1.0 CB A:CYS263 3.1 5.5 1.0 CB A:CYS290 3.2 8.5 1.0 CB A:CYS266 3.3 7.7 1.0 CD2 A:HIS283 3.5 9.7 1.0 N A:CYS266 3.6 8.2 1.0 CA A:CYS266 4.0 8.3 1.0 ND1 A:HIS283 4.3 9.1 1.0 CA A:CYS290 4.4 8.4 1.0 CG A:HIS283 4.5 7.5 1.0 CB A:SER265 4.5 7.6 1.0 CA A:CYS263 4.6 7.2 1.0 CD1 A:LEU287 4.6 7.6 1.0 CG2 A:VAL293 4.6 3.9 1.0 C A:SER265 4.7 8.6 1.0 CB A:LEU287 4.7 6.3 1.0 OG A:SER265 4.8 10.6 1.0 C A:CYS266 4.9 8.8 1.0 N A:GLY267 4.9 8.5 1.0 CA A:SER265 5.0 7.8 1.0 CB A:PHE292 5.0 3.7 1.0

J.W.Wu, A.E.Cocina, J.Chai, B.A.Hay, Y.Shi. Structural Analysis of A Functional DIAP1 Fragment Bound to Grim and Hid Peptides. Mol.Cell V. 8 95 2001.
ISSN: ISSN 1097-2765
PubMed: 11511363
DOI: 10.1016/S1097-2765(01)00282-9