Zinc in PDB 1j30: The Crystal Structure of Sulerythrin, A Rubrerythrin-Like Protein From A Strictly Aerobic and Thermoacidiphilic Archaeon

The structure of The Crystal Structure of Sulerythrin, A Rubrerythrin-Like Protein From A Strictly Aerobic and Thermoacidiphilic Archaeon, PDB code: 1j30 was solved by S.Fushinobu, H.Shoun, T.Wakagi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	24.29 / 1.70
Space group	P 63
Cell size a, b, c (Å), α, β, γ (°)	72.428, 72.428, 98.208, 90.00, 90.00, 120.00
R / Rfree (%)	19.2 / 22.3

The structure of The Crystal Structure of Sulerythrin, A Rubrerythrin-Like Protein From A Strictly Aerobic and Thermoacidiphilic Archaeon also contains other interesting chemical elements:

Iron

(Fe)

2 atoms

The binding sites of Zinc atom in the The Crystal Structure of Sulerythrin, A Rubrerythrin-Like Protein From A Strictly Aerobic and Thermoacidiphilic Archaeon (pdb code 1j30). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the The Crystal Structure of Sulerythrin, A Rubrerythrin-Like Protein From A Strictly Aerobic and Thermoacidiphilic Archaeon, PDB code: 1j30:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the The Crystal Structure of Sulerythrin, A Rubrerythrin-Like Protein From A Strictly Aerobic and Thermoacidiphilic Archaeon


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Crystal Structure of Sulerythrin, A Rubrerythrin-Like Protein From A Strictly Aerobic and Thermoacidiphilic Archaeon within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn405 b:22.2 occ:0.80 OE1 B:GLU53 2.0 21.9 1.0 ND1 A:HIS129 2.0 12.4 1.0 OE2 A:GLU126 2.1 21.3 1.0 OE1 A:GLU92 2.1 23.3 1.0 O2 A:OXY406 2.5 21.3 0.9 OE2 A:GLU92 2.5 32.2 1.0 CD A:GLU92 2.6 25.7 1.0 CE1 A:HIS129 2.9 12.6 1.0 CD B:GLU53 2.9 21.4 1.0 CG A:HIS129 3.0 12.2 1.0 OE2 B:GLU53 3.2 19.0 1.0 CD A:GLU126 3.2 19.5 1.0 O1 A:OXY406 3.3 22.5 0.7 CB A:HIS129 3.4 10.6 1.0 OE1 A:GLU126 3.7 24.4 1.0 FE B:FE404 3.8 15.8 1.0 NE2 A:HIS129 4.0 10.6 1.0 CG A:GLU92 4.1 17.7 1.0 CD2 A:HIS129 4.1 13.0 1.0 CG2 B:ILE49 4.2 12.3 1.0 CG B:GLU53 4.3 10.9 1.0 CA A:GLU126 4.4 11.0 1.0 OH B:TYR27 4.4 20.2 1.0 CE1 B:TYR27 4.4 13.0 1.0 CG A:GLU126 4.4 12.6 1.0 OE1 A:GLU95 4.5 27.8 1.0 CB A:GLU126 4.6 11.4 1.0 CZ B:TYR27 4.9 18.8 1.0 CA A:HIS129 5.0 15.2 1.0 CB A:GLU92 5.0 15.7 1.0

Zinc binding site 2 out of 2 in the The Crystal Structure of Sulerythrin, A Rubrerythrin-Like Protein From A Strictly Aerobic and Thermoacidiphilic Archaeon


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of The Crystal Structure of Sulerythrin, A Rubrerythrin-Like Protein From A Strictly Aerobic and Thermoacidiphilic Archaeon within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn402 b:26.3 occ:0.87 ND1 B:HIS129 2.0 16.4 1.0 OE1 B:GLU126 2.0 25.0 1.0 OE2 B:GLU92 2.1 24.8 1.0 OE2 A:GLU53 2.2 26.8 1.0 OE1 B:GLU92 2.7 38.5 1.0 CD B:GLU92 2.7 29.7 1.0 O2 B:OXY403 2.7 23.2 0.8 CE1 B:HIS129 2.9 16.2 1.0 CD A:GLU53 2.9 21.8 1.0 CG B:HIS129 3.0 16.5 1.0 CD B:GLU126 3.1 22.3 1.0 OE1 A:GLU53 3.1 18.8 1.0 CB B:HIS129 3.4 15.1 1.0 O1 B:OXY403 3.5 20.7 0.8 OE2 B:GLU126 3.5 23.5 1.0 FE A:FE401 3.8 16.3 1.0 NE2 B:HIS129 4.0 16.5 1.0 CD2 B:HIS129 4.1 17.0 1.0 CG B:GLU92 4.1 25.5 1.0 CG2 A:ILE49 4.2 15.3 1.0 CG A:GLU53 4.3 9.8 1.0 CA B:GLU126 4.3 15.3 1.0 OH A:TYR27 4.4 21.6 1.0 CG B:GLU126 4.4 16.6 1.0 CE1 A:TYR27 4.4 17.2 1.0 CB B:GLU126 4.6 17.0 1.0 OE1 B:GLU95 4.9 25.7 1.0 CB B:GLU92 4.9 17.8 1.0 CZ A:TYR27 4.9 16.2 1.0 CA B:HIS129 4.9 17.0 1.0

S.Fushinobu, H.Shoun, T.Wakagi. The Crystal Structure of Sulerythrin, A Rubrerythrin-Like Protein From A Strictly Aerobic Archaeon, Sulfolobus Tokodaii Strain 7, Shows Unexpected Domain Swapping Biochemistry V. 42 11707 2003.
ISSN: ISSN 0006-2960
PubMed: 14529281
DOI: 10.1021/BI034220B