Zinc in PDB 1iym: Ring-H2 Finger Domain of EL5

The binding sites of Zinc atom in the Ring-H2 Finger Domain of EL5 (pdb code 1iym). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Ring-H2 Finger Domain of EL5, PDB code: 1iym:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Ring-H2 Finger Domain of EL5


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Ring-H2 Finger Domain of EL5 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn182 b:0.0 occ:1.00 ND1 A:HIS158 2.1 0.0 1.0 SG A:CYS137 2.3 0.0 1.0 SG A:CYS134 2.3 0.0 1.0 SG A:CYS161 2.3 0.0 1.0 HB2 A:HIS158 2.8 0.0 1.0 H A:CYS137 2.9 0.0 1.0 HB3 A:CYS137 3.1 0.0 1.0 CE1 A:HIS158 3.1 0.0 1.0 CG A:HIS158 3.1 0.0 1.0 HB2 A:CYS161 3.2 0.0 1.0 CB A:CYS134 3.2 0.0 1.0 CB A:CYS137 3.3 0.0 1.0 HB2 A:CYS134 3.3 0.0 1.0 HE1 A:HIS158 3.3 0.0 1.0 CB A:CYS161 3.3 0.0 1.0 HB3 A:CYS134 3.4 0.0 1.0 CB A:HIS158 3.4 0.0 1.0 HB3 A:CYS161 3.6 0.0 1.0 N A:CYS137 3.7 0.0 1.0 HB A:VAL136 3.8 0.0 1.0 H A:ALA139 3.8 0.0 1.0 HB2 A:ALA139 3.9 0.0 1.0 H A:HIS158 4.0 0.0 1.0 HB3 A:HIS158 4.0 0.0 1.0 CA A:CYS137 4.0 0.0 1.0 H A:LEU138 4.1 0.0 1.0 HB2 A:CYS137 4.1 0.0 1.0 CD2 A:HIS158 4.2 0.0 1.0 NE2 A:HIS158 4.2 0.0 1.0 H A:CYS161 4.3 0.0 1.0 HD21 A:LEU141 4.4 0.0 1.0 N A:HIS158 4.5 0.0 1.0 N A:LEU138 4.5 0.0 1.0 CA A:HIS158 4.6 0.0 1.0 C A:CYS137 4.6 0.0 1.0 HB3 A:ALA139 4.6 0.0 1.0 CA A:CYS161 4.7 0.0 1.0 CA A:CYS134 4.7 0.0 1.0 HG11 A:VAL136 4.7 0.0 1.0 N A:ALA139 4.7 0.0 1.0 H A:VAL136 4.7 0.0 1.0 CB A:ALA139 4.7 0.0 1.0 CB A:VAL136 4.8 0.0 1.0 N A:CYS161 4.9 0.0 1.0 C A:VAL136 4.9 0.0 1.0 HA A:CYS134 4.9 0.0 1.0 HA A:CYS137 4.9 0.0 1.0

Zinc binding site 2 out of 2 in the Ring-H2 Finger Domain of EL5


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Ring-H2 Finger Domain of EL5 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn183 b:0.0 occ:1.00 ND1 A:HIS155 2.1 0.0 1.0 SG A:CYS153 2.3 0.0 1.0 SG A:CYS172 2.3 0.0 1.0 SG A:CYS175 2.3 0.0 1.0 HB2 A:HIS155 2.8 0.0 1.0 CE1 A:HIS155 3.1 0.0 1.0 CG A:HIS155 3.1 0.0 1.0 H A:CYS175 3.1 0.0 1.0 HB3 A:CYS175 3.2 0.0 1.0 HB3 A:CYS172 3.2 0.0 1.0 CB A:CYS172 3.2 0.0 1.0 CB A:CYS153 3.3 0.0 1.0 HE1 A:HIS155 3.3 0.0 1.0 CB A:CYS175 3.4 0.0 1.0 HB2 A:CYS153 3.4 0.0 1.0 HD12 A:LEU177 3.4 0.0 1.0 CB A:HIS155 3.4 0.0 1.0 HB3 A:CYS153 3.4 0.0 1.0 HB2 A:CYS172 3.5 0.0 1.0 HB2 A:LEU177 3.6 0.0 1.0 H A:HIS155 3.6 0.0 1.0 H A:ARG176 3.6 0.0 1.0 HD13 A:LEU177 3.8 0.0 1.0 H A:LEU177 3.8 0.0 1.0 N A:CYS175 3.8 0.0 1.0 HE2 A:PHE157 3.9 0.0 1.0 HB3 A:LEU174 4.0 0.0 1.0 CD1 A:LEU177 4.0 0.0 1.0 HB3 A:HIS155 4.1 0.0 1.0 CA A:CYS175 4.2 0.0 1.0 CD2 A:HIS155 4.2 0.0 1.0 HB2 A:CYS175 4.2 0.0 1.0 NE2 A:HIS155 4.2 0.0 1.0 HZ A:PHE157 4.3 0.0 1.0 HB2 A:LEU150 4.4 0.0 1.0 N A:HIS155 4.4 0.0 1.0 H A:LEU174 4.4 0.0 1.0 H A:GLY154 4.4 0.0 1.0 N A:ARG176 4.5 0.0 1.0 HG A:LEU177 4.5 0.0 1.0 CB A:LEU177 4.5 0.0 1.0 HD11 A:LEU150 4.5 0.0 1.0 CA A:HIS155 4.5 0.0 1.0 CG A:LEU177 4.6 0.0 1.0 CA A:CYS172 4.7 0.0 1.0 HD13 A:LEU150 4.7 0.0 1.0 CA A:CYS153 4.7 0.0 1.0 H A:CYS153 4.7 0.0 1.0 N A:LEU177 4.7 0.0 1.0 CE2 A:PHE157 4.7 0.0 1.0 C A:CYS175 4.8 0.0 1.0 C A:LEU174 4.9 0.0 1.0 CZ A:PHE157 4.9 0.0 1.0 HD2 A:PRO173 4.9 0.0 1.0 HD11 A:LEU177 5.0 0.0 1.0 CB A:LEU174 5.0 0.0 1.0 HG A:LEU150 5.0 0.0 1.0

S.Katoh, C.Hong, Y.Tsunoda, K.Murata, R.Takai, E.Minami, T.Yamazaki, E.Katoh. High Precision uc(Nmr) Structure and Function of the Ring-H2 Finger Domain of EL5, A Rice Protein Whose Expression Is Increased Upon Exposure to Pathogen-Derived Oligosaccharides J.Biol.Chem. V. 278 15341 2003.
ISSN: ISSN 0021-9258
PubMed: 12588869
DOI: 10.1074/JBC.M210531200