Zinc in PDB 1iuj: The Structure of TT1380 Protein From Thermus Thermophilus

The structure of The Structure of TT1380 Protein From Thermus Thermophilus, PDB code: 1iuj was solved by T.Wada, M.Shirouzu, S.-Y.Park, J.R.H.Tame, S.Kuramitsu, S.Yokoyama, Riken Structural Genomics/Proteomics Initiative(Rsgi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.07 / 1.60
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	81.820, 51.998, 62.186, 90.00, 124.25, 90.00
R / Rfree (%)	23.3 / 26.4

The binding sites of Zinc atom in the The Structure of TT1380 Protein From Thermus Thermophilus (pdb code 1iuj). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 7 binding sites of Zinc where determined in the The Structure of TT1380 Protein From Thermus Thermophilus, PDB code: 1iuj:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7;

Zinc binding site 1 out of 7 in the The Structure of TT1380 Protein From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Structure of TT1380 Protein From Thermus Thermophilus within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn2007 b:27.8 occ:1.00 NE2 A:HIS75 2.2 46.7 1.0 NH2 A:ARG25 2.8 39.2 1.0 O A:HOH1001 2.9 8.2 1.0 CE1 A:HIS75 3.0 46.9 1.0 O A:HOH1017 3.1 20.1 1.0 CD2 A:HIS75 3.3 47.9 1.0 O A:HOH1047 3.4 31.2 1.0 CZ A:ARG25 3.8 37.5 1.0 CH2 A:TRP65 3.8 30.2 1.0 NH1 A:ARG25 4.0 37.0 1.0 ND1 A:HIS75 4.1 46.8 1.0 CG A:HIS75 4.3 49.0 1.0 CE1 A:PHE71 4.4 21.8 1.0 CZ3 A:TRP65 4.5 29.9 1.0 CZ2 A:TRP65 4.8 29.4 1.0 OD1 A:ASN6 4.9 18.0 1.0 CE1 A:PHE22 4.9 17.7 1.0 CZ A:PHE71 4.9 22.8 1.0 NE A:ARG25 4.9 36.8 1.0

Zinc binding site 2 out of 7 in the The Structure of TT1380 Protein From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of The Structure of TT1380 Protein From Thermus Thermophilus within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn2001 b:13.7 occ:1.00 OE1 B:GLU67 1.9 13.1 1.0 CD B:GLU67 2.8 11.2 1.0 OE2 B:GLU67 3.0 12.5 1.0 ZN B:ZN2002 3.3 13.6 1.0 O B:HOH1027 3.8 19.9 1.0 ZN B:ZN2005 3.9 14.2 1.0 CG B:GLU67 4.2 11.1 1.0 CB B:GLU67 4.7 12.9 1.0

Zinc binding site 3 out of 7 in the The Structure of TT1380 Protein From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of The Structure of TT1380 Protein From Thermus Thermophilus within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn2002 b:13.6 occ:1.00 O B:HOH1027 1.9 19.9 1.0 ZN B:ZN2005 2.9 14.2 1.0 OE2 B:GLU60 3.1 17.7 1.0 ZN B:ZN2001 3.3 13.7 1.0 ZN B:ZN2003 3.4 14.0 1.0 CD B:GLU60 4.1 19.0 1.0 OE1 B:GLU67 4.2 13.1 1.0 OE1 B:GLU60 4.3 14.0 1.0 O B:HOH1053 4.3 25.2 1.0 OE2 B:GLU67 4.8 12.5 1.0 CD B:GLU67 4.8 11.2 1.0 CB B:ARG63 4.9 11.9 1.0

Zinc binding site 4 out of 7 in the The Structure of TT1380 Protein From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of The Structure of TT1380 Protein From Thermus Thermophilus within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn2003 b:14.0 occ:1.00 OE1 B:GLU60 1.9 14.0 1.0 CD B:GLU60 2.7 19.0 1.0 OE2 B:GLU60 2.8 17.7 1.0 ZN B:ZN2004 3.2 16.7 1.0 ZN B:ZN2002 3.4 13.6 1.0 ZN B:ZN2005 3.5 14.2 1.0 CD B:ARG63 3.6 25.2 1.0 NE B:ARG63 3.9 28.3 1.0 NH1 B:ARG63 4.0 27.7 1.0 CZ B:ARG63 4.1 22.9 1.0 CG B:GLU60 4.1 14.1 1.0 O B:HOH1027 4.2 19.9 1.0 CG B:ARG63 4.6 16.1 1.0 CB B:ARG63 4.6 11.9 1.0 CB B:GLU60 4.7 12.8 1.0 CA B:GLU60 4.9 12.0 1.0 NH2 B:ARG63 5.0 31.8 1.0

Zinc binding site 5 out of 7 in the The Structure of TT1380 Protein From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of The Structure of TT1380 Protein From Thermus Thermophilus within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn2004 b:16.7 occ:1.00 ZN B:ZN2003 3.2 14.0 1.0 ZN B:ZN2005 3.3 14.2 1.0 NE B:ARG63 3.5 28.3 1.0 CZ B:ARG63 3.8 22.9 1.0 NH2 B:ARG63 4.0 31.8 1.0 CD B:ARG63 4.1 25.2 1.0 NH1 B:ARG63 4.6 27.7 1.0 OE1 B:GLU60 4.7 14.0 1.0 CG B:ARG63 4.7 16.1 1.0

Zinc binding site 6 out of 7 in the The Structure of TT1380 Protein From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of The Structure of TT1380 Protein From Thermus Thermophilus within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn2005 b:14.2 occ:1.00 ZN B:ZN2002 2.9 13.6 1.0 ZN B:ZN2004 3.3 16.7 1.0 ZN B:ZN2003 3.5 14.0 1.0 ZN B:ZN2001 3.9 13.7 1.0 OE2 B:GLU67 4.2 12.5 1.0 O B:HOH1027 4.2 19.9 1.0 OE1 B:GLU67 4.9 13.1 1.0 CD B:GLU67 5.0 11.2 1.0

Zinc binding site 7 out of 7 in the The Structure of TT1380 Protein From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of The Structure of TT1380 Protein From Thermus Thermophilus within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn2006 b:26.1 occ:1.00 NE2 B:HIS75 2.0 19.6 1.0 O B:HOH1046 2.4 37.8 1.0 CD2 B:HIS75 3.0 24.9 1.0 CE1 B:HIS75 3.0 22.3 1.0 O B:HOH1051 3.6 35.2 1.0 NH2 B:ARG25 4.0 18.6 1.0 CZ B:PHE71 4.1 14.7 1.0 ND1 B:HIS75 4.1 21.3 1.0 OD1 B:ASN6 4.1 19.3 1.0 CG B:HIS75 4.1 24.0 1.0 NH1 B:ARG25 4.2 24.4 1.0 CZ B:ARG25 4.6 22.3 1.0 CE1 B:PHE71 4.7 11.4 1.0 CE2 B:PHE71 4.8 15.3 1.0

T.Wada, M.Shirouzu, T.Terada, Y.Kamewari, S.-Y.Park, J.R.H.Tame, S.Kuramitsu, S.Yokoyama. Crystal Structure of the Conserved Hypothetical Protein TT1380 From Thermus Thermophilus HB8 Proteins V. 55 778 2004.
ISSN: ISSN 0887-3585
PubMed: 15103643
DOI: 10.1002/PROT.20122