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Zinc in PDB 1hyj: Solution Structure of the EEA1 Fyve Domain

Zinc Binding Sites:

The binding sites of Zinc atom in the Solution Structure of the EEA1 Fyve Domain (pdb code 1hyj). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Solution Structure of the EEA1 Fyve Domain, PDB code: 1hyj:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 1hyj

Go back to Zinc Binding Sites List in 1hyj
Zinc binding site 1 out of 2 in the Solution Structure of the EEA1 Fyve Domain


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of the EEA1 Fyve Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn66

b:0.0
occ:1.00
HB2 A:CYS15 1.8 0.0 1.0
HG A:CYS36 1.9 0.0 1.0
HG A:CYS39 2.1 0.0 1.0
H A:CYS15 2.4 0.0 1.0
CB A:CYS15 2.6 0.0 1.0
SG A:CYS36 2.6 0.0 1.0
SG A:CYS39 2.6 0.0 1.0
SG A:CYS12 2.7 0.0 1.0
SG A:CYS15 2.8 0.0 1.0
HB2 A:ALA14 3.0 0.0 1.0
HB3 A:GLU38 3.1 0.0 1.0
N A:CYS15 3.1 0.0 1.0
HG A:CYS15 3.3 0.0 1.0
HB3 A:CYS15 3.4 0.0 1.0
CA A:CYS15 3.5 0.0 1.0
H A:CYS39 3.5 0.0 1.0
HG A:CYS12 3.5 0.0 1.0
HB2 A:CYS39 3.5 0.0 1.0
H A:CYS36 3.7 0.0 1.0
H A:GLY16 3.7 0.0 1.0
HB3 A:CYS12 3.7 0.0 1.0
CB A:CYS39 3.7 0.0 1.0
CB A:CYS12 3.8 0.0 1.0
HB2 A:CYS12 4.0 0.0 1.0
CB A:ALA14 4.0 0.0 1.0
N A:CYS39 4.0 0.0 1.0
OE1 A:GLU38 4.0 0.0 1.0
CB A:GLU38 4.0 0.0 1.0
H A:LYS17 4.1 0.0 1.0
CB A:CYS36 4.1 0.0 1.0
HB2 A:GLU38 4.1 0.0 1.0
HB3 A:CYS36 4.2 0.0 1.0
HE2 A:LYS17 4.2 0.0 1.0
HB3 A:LYS17 4.2 0.0 1.0
C A:ALA14 4.3 0.0 1.0
HA A:CYS15 4.3 0.0 1.0
H A:ALA14 4.3 0.0 1.0
N A:GLY16 4.4 0.0 1.0
C A:CYS15 4.4 0.0 1.0
HB1 A:ALA14 4.5 0.0 1.0
CA A:CYS39 4.5 0.0 1.0
HB2 A:LYS17 4.5 0.0 1.0
N A:CYS36 4.6 0.0 1.0
HB3 A:CYS39 4.6 0.0 1.0
HB3 A:ALA14 4.6 0.0 1.0
CD A:GLU38 4.6 0.0 1.0
HE3 A:LYS17 4.6 0.0 1.0
HD1 A:PHE35 4.6 0.0 1.0
CA A:ALA14 4.7 0.0 1.0
H A:GLU38 4.7 0.0 1.0
C A:GLU38 4.8 0.0 1.0
HB2 A:CYS36 4.8 0.0 1.0
HA A:CYS39 4.9 0.0 1.0
N A:ALA14 4.9 0.0 1.0
CB A:LYS17 4.9 0.0 1.0
CA A:GLU38 4.9 0.0 1.0
CE A:LYS17 4.9 0.0 1.0
CA A:CYS36 5.0 0.0 1.0

Zinc binding site 2 out of 2 in 1hyj

Go back to Zinc Binding Sites List in 1hyj
Zinc binding site 2 out of 2 in the Solution Structure of the EEA1 Fyve Domain


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of the EEA1 Fyve Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn67

b:0.0
occ:1.00
HB2 A:CYS31 1.9 0.0 1.0
HG A:CYS28 2.0 0.0 1.0
SG A:CYS59 2.7 0.0 1.0
CB A:CYS31 2.7 0.0 1.0
H A:CYS31 2.7 0.0 1.0
SG A:CYS56 2.8 0.0 1.0
SG A:CYS31 2.8 0.0 1.0
SG A:CYS28 2.8 0.0 1.0
HB2 A:CYS59 2.9 0.0 1.0
HG A:CYS56 2.9 0.0 1.0
HB3 A:GLN30 3.1 0.0 1.0
HG A:CYS59 3.2 0.0 1.0
CB A:CYS59 3.3 0.0 1.0
N A:CYS31 3.3 0.0 1.0
HB3 A:CYS31 3.4 0.0 1.0
HG A:CYS31 3.5 0.0 1.0
HE2 A:PHE35 3.6 0.0 1.0
HB3 A:CYS28 3.6 0.0 1.0
H A:CYS56 3.6 0.0 1.0
CA A:CYS31 3.7 0.0 1.0
CB A:CYS28 3.8 0.0 1.0
H A:CYS59 3.8 0.0 1.0
HB3 A:CYS59 4.0 0.0 1.0
HB A:VAL55 4.1 0.0 1.0
HB2 A:CYS28 4.1 0.0 1.0
H A:GLY32 4.2 0.0 1.0
CB A:GLN30 4.2 0.0 1.0
HB2 A:ASN33 4.4 0.0 1.0
HA A:CYS31 4.4 0.0 1.0
CB A:CYS56 4.4 0.0 1.0
C A:GLN30 4.4 0.0 1.0
N A:CYS56 4.4 0.0 1.0
CA A:CYS59 4.4 0.0 1.0
N A:CYS59 4.4 0.0 1.0
CE2 A:PHE35 4.5 0.0 1.0
HB3 A:CYS56 4.5 0.0 1.0
HG2 A:GLN30 4.6 0.0 1.0
HA A:CYS59 4.6 0.0 1.0
H A:GLN30 4.7 0.0 1.0
HB2 A:ALA58 4.7 0.0 1.0
HB2 A:GLN30 4.7 0.0 1.0
C A:CYS31 4.7 0.0 1.0
HZ A:PHE35 4.7 0.0 1.0
H A:ASN33 4.7 0.0 1.0
N A:GLY32 4.8 0.0 1.0
CA A:GLN30 4.8 0.0 1.0
HA A:VAL55 4.9 0.0 1.0
CG A:GLN30 5.0 0.0 1.0
N A:GLN30 5.0 0.0 1.0

Reference:

T.Kutateladze, M.Overduin. Structural Mechanism of Endosome Docking By the Fyve Domain. Science V. 291 1793 2001.
ISSN: ISSN 0036-8075
PubMed: 11230696
DOI: 10.1126/SCIENCE.291.5509.1793
Page generated: Wed Dec 16 02:52:13 2020

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