Zinc in PDB 1hww: Golgi Alpha-Mannosidase II in Complex with Swainsonine

All present enzymatic activity of Golgi Alpha-Mannosidase II in Complex with Swainsonine:
3.2.1.114;

The structure of Golgi Alpha-Mannosidase II in Complex with Swainsonine, PDB code: 1hww was solved by J.M.H.Van Den Elsen, D.A.Kuntz, D.R.Rose, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	69.24 / 1.87
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	68.902, 110.015, 138.472, 90.00, 90.00, 90.00
R / Rfree (%)	18.1 / 20.9

The binding sites of Zinc atom in the Golgi Alpha-Mannosidase II in Complex with Swainsonine (pdb code 1hww). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Golgi Alpha-Mannosidase II in Complex with Swainsonine, PDB code: 1hww:

Zinc binding site 1 out of 1 in the Golgi Alpha-Mannosidase II in Complex with Swainsonine


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Golgi Alpha-Mannosidase II in Complex with Swainsonine within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1102 b:12.8 occ:1.00 NE2 A:HIS90 2.1 10.1 1.0 NE2 A:HIS471 2.2 10.1 1.0 OD1 A:ASP92 2.2 12.3 1.0 OD1 A:ASP204 2.2 12.4 1.0 O13 A:SWA1103 2.3 11.9 1.0 O11 A:SWA1103 2.3 11.8 1.0 CD2 A:HIS90 3.0 9.4 1.0 CD2 A:HIS471 3.0 10.7 1.0 CG A:ASP204 3.1 12.3 1.0 CG A:ASP92 3.1 12.4 1.0 CE1 A:HIS90 3.2 10.0 1.0 CE1 A:HIS471 3.2 10.6 1.0 C8 A:SWA1103 3.2 12.7 1.0 C7 A:SWA1103 3.3 12.0 1.0 CB A:ASP204 3.5 12.2 1.0 OD2 A:ASP92 3.5 13.6 1.0 C9 A:SWA1103 3.9 12.9 1.0 OD2 A:ASP472 4.1 12.5 1.0 N4 A:SWA1103 4.1 12.2 1.0 CG A:HIS90 4.2 10.0 1.0 CG A:HIS471 4.2 10.5 1.0 C3 A:SWA1103 4.2 12.0 1.0 ND1 A:HIS90 4.3 10.7 1.0 OD2 A:ASP204 4.3 12.1 1.0 ND1 A:HIS471 4.3 11.1 1.0 NE2 A:HIS470 4.4 13.6 1.0 CB A:ASP92 4.5 11.9 1.0 O A:HOH1196 4.6 13.8 1.0 OH A:TYR269 4.7 13.2 1.0 C1 A:SWA1103 4.7 11.6 1.0 CA A:ASP204 5.0 12.7 1.0

J.M.Van Den Elsen, D.A.Kuntz, D.R.Rose. Structure of Golgi Alpha-Mannosidase II: A Target For Inhibition of Growth and Metastasis of Cancer Cells. Embo J. V. 20 3008 2001.
ISSN: ISSN 0261-4189
PubMed: 11406577
DOI: 10.1093/EMBOJ/20.12.3008