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Zinc in PDB 1hvo: Zinc-and Sequence-Dependent Binding to Nucleic Acids By the N-Terminal Zinc Finger Domain of the Hiv-1 Nucleocapsid Protein: uc(Nmr) Structure of the Complex with the Psi-Site Analog, D/Acgcc

Zinc Binding Sites:

The binding sites of Zinc atom in the Zinc-and Sequence-Dependent Binding to Nucleic Acids By the N-Terminal Zinc Finger Domain of the Hiv-1 Nucleocapsid Protein: uc(Nmr) Structure of the Complex with the Psi-Site Analog, D/Acgcc (pdb code 1hvo). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Zinc-and Sequence-Dependent Binding to Nucleic Acids By the N-Terminal Zinc Finger Domain of the Hiv-1 Nucleocapsid Protein: uc(Nmr) Structure of the Complex with the Psi-Site Analog, D/Acgcc, PDB code: 1hvo:

Zinc binding site 1 out of 1 in 1hvo

Go back to Zinc Binding Sites List in 1hvo
Zinc binding site 1 out of 1 in the Zinc-and Sequence-Dependent Binding to Nucleic Acids By the N-Terminal Zinc Finger Domain of the Hiv-1 Nucleocapsid Protein: uc(Nmr) Structure of the Complex with the Psi-Site Analog, D/Acgcc


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Zinc-and Sequence-Dependent Binding to Nucleic Acids By the N-Terminal Zinc Finger Domain of the Hiv-1 Nucleocapsid Protein: uc(Nmr) Structure of the Complex with the Psi-Site Analog, D/Acgcc within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Zn19

b:0.0
occ:1.00
NE2 E:HIS11 2.0 0.0 1.0
SG E:CYS16 2.3 0.0 1.0
SG E:CYS6 2.3 0.0 1.0
SG E:CYS3 2.3 0.0 1.0
H E:CYS6 2.8 0.0 1.0
HB3 E:ASN5 2.9 0.0 1.0
CD2 E:HIS11 3.0 0.0 1.0
CE1 E:HIS11 3.0 0.0 1.0
HB2 E:CYS16 3.1 0.0 1.0
HD2 E:HIS11 3.2 0.0 1.0
HB3 E:CYS6 3.2 0.0 1.0
HB3 E:CYS3 3.2 0.0 1.0
HE1 E:HIS11 3.3 0.0 1.0
CB E:CYS3 3.3 0.0 1.0
CB E:CYS16 3.4 0.0 1.0
CB E:CYS6 3.4 0.0 1.0
N E:CYS6 3.6 0.0 1.0
HB2 E:CYS3 3.7 0.0 1.0
HD21 E:ASN5 3.8 0.0 1.0
HA E:CYS16 3.9 0.0 1.0
CB E:ASN5 4.0 0.0 1.0
HA E:ALA13 4.0 0.0 1.0
CA E:CYS6 4.1 0.0 1.0
CG E:HIS11 4.1 0.0 1.0
ND1 E:HIS11 4.1 0.0 1.0
H E:ASN5 4.1 0.0 1.0
HB3 E:CYS16 4.2 0.0 1.0
H E:GLY7 4.2 0.0 1.0
HB2 E:LYS8 4.2 0.0 1.0
H E:LYS8 4.2 0.0 1.0
HB2 E:CYS6 4.3 0.0 1.0
CA E:CYS16 4.3 0.0 1.0
H E:ALA18 4.4 0.0 1.0
C E:ASN5 4.4 0.0 1.0
HA E:ALA18 4.6 0.0 1.0
ND2 E:ASN5 4.6 0.0 1.0
CA E:ASN5 4.6 0.0 1.0
HB2 E:ASN5 4.6 0.0 1.0
CG E:ASN5 4.7 0.0 1.0
N E:ASN5 4.7 0.0 1.0
CA E:CYS3 4.7 0.0 1.0
N E:GLY7 4.9 0.0 1.0
HB3 E:ALA18 4.9 0.0 1.0
HA E:CYS6 4.9 0.0 1.0
O E:ILE12 4.9 0.0 1.0
H E:ARG17 5.0 0.0 1.0

Reference:

T.L.South, M.F.Summers. Zinc- and Sequence-Dependent Binding to Nucleic Acids By the N-Terminal Zinc Finger of the Hiv-1 Nucleocapsid Protein: uc(Nmr) Structure of the Complex with the Psi-Site Analog, Dacgcc. Protein Sci. V. 2 3 1993.
ISSN: ISSN 0961-8368
PubMed: 8443588
Page generated: Sun Oct 13 02:35:38 2024

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