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Zinc in PDB 1h8l: Duck Carboxypeptidase D Domain II in Complex with Gemsa

Protein crystallography data

The structure of Duck Carboxypeptidase D Domain II in Complex with Gemsa, PDB code: 1h8l was solved by F.X.Gomis-Rueth, M.Coll, F.X.Aviles, J.Vendrell, L.D.Fricker, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.00 / 2.60
Space group P 21 3
Cell size a, b, c (Å), α, β, γ (°) 136.480, 136.480, 136.480, 90.00, 90.00, 90.00
R / Rfree (%) 19.9 / 23.9

Zinc Binding Sites:

The binding sites of Zinc atom in the Duck Carboxypeptidase D Domain II in Complex with Gemsa (pdb code 1h8l). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Duck Carboxypeptidase D Domain II in Complex with Gemsa, PDB code: 1h8l:

Zinc binding site 1 out of 1 in 1h8l

Go back to Zinc Binding Sites List in 1h8l
Zinc binding site 1 out of 1 in the Duck Carboxypeptidase D Domain II in Complex with Gemsa


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Duck Carboxypeptidase D Domain II in Complex with Gemsa within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn999

b:33.3
occ:1.00
ND1 A:HIS181 2.0 36.2 1.0
ND1 A:HIS74 2.0 35.8 1.0
OE2 A:GLU77 2.1 32.8 1.0
O12 A:GEM801 2.2 40.6 1.0
O13 A:GEM801 2.2 39.9 1.0
C11 A:GEM801 2.5 38.6 1.0
OE1 A:GLU77 2.6 33.6 1.0
CD A:GLU77 2.6 33.5 1.0
CE1 A:HIS74 2.8 33.8 1.0
CE1 A:HIS181 2.9 34.3 1.0
CG A:HIS181 3.1 36.6 1.0
CG A:HIS74 3.2 32.9 1.0
CB A:HIS181 3.5 31.4 1.0
CB A:HIS74 3.7 33.8 1.0
C10 A:GEM801 4.0 36.9 1.0
NE2 A:HIS74 4.0 31.6 1.0
NH1 A:ARG135 4.0 23.1 1.0
O A:HOH2095 4.1 34.6 1.0
CG A:GLU77 4.1 30.8 1.0
NE2 A:HIS181 4.1 35.7 1.0
CD2 A:HIS181 4.2 33.6 1.0
O A:HOH2046 4.2 35.3 1.0
CD2 A:HIS74 4.2 30.5 1.0
O14 A:GEM801 4.3 46.1 1.0
O A:GLY182 4.3 33.2 1.0
CA A:HIS181 4.4 31.7 1.0
C9 A:GEM801 4.5 38.4 1.0
N A:GLY182 4.6 32.5 1.0
C8 A:GEM801 4.6 41.0 1.0
CB A:GLU77 4.7 32.4 1.0
OE1 A:GLU272 4.9 34.8 1.0
S7 A:GEM801 4.9 41.7 1.0
CZ A:ARG135 4.9 28.0 1.0

Reference:

P.Aloy, V.Companys, J.Vendrell, F.X.Aviles, L.D.Fricker, M.Coll, F.X.Gomis-Ruth. The Crystal Structure of the Inhibitor-Complexed Carboxypeptidase D Domain II and the Modeling of Regulatory Carboxypeptidases. J. Biol. Chem. V. 276 16177 2001.
ISSN: ISSN 0021-9258
PubMed: 11278909
DOI: 10.1074/JBC.M011457200
Page generated: Fri Sep 25 21:48:23 2020
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