Zinc in PDB 1g6d: Structure of Peptidyl-D(Cgcaattgcg) in the Presence of Zinc Ions

The structure of Structure of Peptidyl-D(Cgcaattgcg) in the Presence of Zinc Ions, PDB code: 1g6d was solved by M.Soler-Lopez, L.Malinina, V.Tereshko, V.Zarytova, J.A.Subirana, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 2.90
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	27.920, 44.090, 53.220, 90.00, 90.00, 90.00
R / Rfree (%)	20.8 / 21.3

The binding sites of Zinc atom in the Structure of Peptidyl-D(Cgcaattgcg) in the Presence of Zinc Ions (pdb code 1g6d). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the Structure of Peptidyl-D(Cgcaattgcg) in the Presence of Zinc Ions, PDB code: 1g6d:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in the Structure of Peptidyl-D(Cgcaattgcg) in the Presence of Zinc Ions


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of Peptidyl-D(Cgcaattgcg) in the Presence of Zinc Ions within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn11 b:11.3 occ:0.50 O A:HOH25 2.1 16.1 1.0 OP1 A:DC1 2.2 37.6 1.0 P A:DC1 3.6 37.6 1.0 O5' A:DC1 4.2 37.6 1.0 OP3 A:DC1 4.2 37.6 1.0 OP2 A:DC1 4.7 37.6 1.0

Zinc binding site 2 out of 3 in the Structure of Peptidyl-D(Cgcaattgcg) in the Presence of Zinc Ions


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of Peptidyl-D(Cgcaattgcg) in the Presence of Zinc Ions within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn12 b:19.1 occ:0.90 O A:HOH18 2.1 21.8 0.9 O A:HOH15 2.1 21.8 0.9 O A:HOH17 2.1 21.8 0.9 O A:HOH16 2.1 21.8 0.9 O A:HOH14 2.1 21.8 0.9 N7 A:DG10 2.2 7.8 1.0 C8 A:DG10 3.0 6.9 1.0 C5 A:DG10 3.4 7.0 1.0 O6 A:DG10 3.8 6.9 1.0 C6 A:DG10 4.0 6.9 1.0 OP2 A:DG10 4.0 8.7 1.0 N9 A:DG10 4.3 6.9 1.0 C4 A:DG10 4.5 7.0 1.0

Zinc binding site 3 out of 3 in the Structure of Peptidyl-D(Cgcaattgcg) in the Presence of Zinc Ions


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Structure of Peptidyl-D(Cgcaattgcg) in the Presence of Zinc Ions within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn13 b:25.6 occ:0.75 O A:HOH22 2.1 23.2 0.8 O A:HOH20 2.1 23.2 0.8 O A:HOH19 2.1 23.2 0.8 O A:HOH23 2.1 23.2 0.8 O A:HOH21 2.1 23.2 0.8 N7 A:DG2 2.2 6.9 1.0 C8 A:DG2 2.7 6.9 1.0 C5 A:DG2 3.4 6.9 1.0 N9 A:DG2 4.0 6.9 1.0 O A:HOH34 4.1 29.1 1.0 O6 A:DG2 4.2 6.9 1.0 C6 A:DG2 4.2 6.9 1.0 C4 A:DG2 4.4 6.9 1.0 OP1 A:DG2 4.5 22.9 1.0 N4 A:DC3 4.5 6.9 1.0 O5' A:DG2 4.8 19.0 1.0

M.Soler-Lopez, L.Malinina, V.Tereshko, V.Zarytova, J.A.Subirana. Interaction of Zinc Ions with D(Cgcaattgcg) in A 2.9 A Resolution X-Ray Structure. J.Biol.Inorg.Chem. V. 7 533 2002.
ISSN: ISSN 0949-8257
PubMed: 11941511
DOI: 10.1007/S00775-001-0333-Z