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Zinc in PDB 1g25: Solution Structure of the N-Terminal Domain of the Human Tfiih MAT1 Subunit

Zinc Binding Sites:

The binding sites of Zinc atom in the Solution Structure of the N-Terminal Domain of the Human Tfiih MAT1 Subunit (pdb code 1g25). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Solution Structure of the N-Terminal Domain of the Human Tfiih MAT1 Subunit, PDB code: 1g25:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 1g25

Go back to Zinc Binding Sites List in 1g25
Zinc binding site 1 out of 2 in the Solution Structure of the N-Terminal Domain of the Human Tfiih MAT1 Subunit


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of the N-Terminal Domain of the Human Tfiih MAT1 Subunit within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn66

b:0.0
occ:1.00
H A:CYS9 2.2 0.0 1.0
SG A:CYS6 2.3 0.0 1.0
SG A:CYS31 2.3 0.0 1.0
SG A:CYS34 2.3 0.0 1.0
SG A:CYS9 2.3 0.0 1.0
HD2 A:PRO7 3.0 0.0 1.0
N A:CYS9 3.1 0.0 1.0
HB3 A:ARG8 3.1 0.0 1.0
HB3 A:CYS31 3.1 0.0 1.0
HB2 A:CYS6 3.1 0.0 1.0
N A:CYS34 3.2 0.0 1.0
H A:CYS34 3.3 0.0 1.0
HA A:CYS34 3.3 0.0 1.0
CB A:CYS34 3.3 0.0 1.0
CB A:CYS6 3.3 0.0 1.0
CB A:CYS31 3.3 0.0 1.0
CB A:CYS9 3.4 0.0 1.0
HB2 A:SER33 3.4 0.0 1.0
CA A:CYS34 3.5 0.0 1.0
HB2 A:CYS34 3.6 0.0 1.0
C A:SER33 3.6 0.0 1.0
CA A:CYS9 3.7 0.0 1.0
HB2 A:CYS9 3.7 0.0 1.0
H A:ARG8 3.8 0.0 1.0
HB3 A:SER33 3.8 0.0 1.0
HG1 A:THR12 3.9 0.0 1.0
CB A:ARG8 3.9 0.0 1.0
HB3 A:CYS6 4.0 0.0 1.0
C A:CYS9 4.0 0.0 1.0
CB A:SER33 4.0 0.0 1.0
H A:CYS31 4.0 0.0 1.0
CD A:PRO7 4.0 0.0 1.0
HB2 A:ARG8 4.0 0.0 1.0
C A:ARG8 4.1 0.0 1.0
HB2 A:CYS31 4.1 0.0 1.0
N A:ARG8 4.1 0.0 1.0
O A:SER33 4.1 0.0 1.0
O A:CYS9 4.2 0.0 1.0
H A:SER33 4.3 0.0 1.0
CA A:SER33 4.3 0.0 1.0
HB3 A:CYS34 4.3 0.0 1.0
CA A:ARG8 4.3 0.0 1.0
CA A:CYS31 4.3 0.0 1.0
HB3 A:CYS9 4.4 0.0 1.0
N A:CYS31 4.4 0.0 1.0
N A:SER33 4.5 0.0 1.0
CA A:CYS6 4.5 0.0 1.0
N A:LYS10 4.5 0.0 1.0
N A:PRO7 4.5 0.0 1.0
HD3 A:PRO7 4.5 0.0 1.0
HA A:CYS6 4.6 0.0 1.0
C A:CYS31 4.6 0.0 1.0
HG2 A:PRO7 4.6 0.0 1.0
OG1 A:THR12 4.7 0.0 1.0
H A:LYS10 4.7 0.0 1.0
O A:CYS31 4.7 0.0 1.0
HA A:CYS9 4.7 0.0 1.0
C A:CYS6 4.8 0.0 1.0
OE2 A:GLU32 4.8 0.0 1.0
C A:PRO7 4.9 0.0 1.0
HA A:LYS10 4.9 0.0 1.0
CG A:PRO7 5.0 0.0 1.0
C A:CYS34 5.0 0.0 1.0

Zinc binding site 2 out of 2 in 1g25

Go back to Zinc Binding Sites List in 1g25
Zinc binding site 2 out of 2 in the Solution Structure of the N-Terminal Domain of the Human Tfiih MAT1 Subunit


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of the N-Terminal Domain of the Human Tfiih MAT1 Subunit within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn67

b:0.0
occ:1.00
ND1 A:HIS28 2.0 0.0 1.0
SG A:CYS46 2.3 0.0 1.0
SG A:CYS49 2.3 0.0 1.0
SG A:CYS26 2.3 0.0 1.0
HB2 A:HIS28 2.9 0.0 1.0
CE1 A:HIS28 3.0 0.0 1.0
CG A:HIS28 3.1 0.0 1.0
H A:CYS49 3.1 0.0 1.0
HB3 A:CYS49 3.1 0.0 1.0
HE1 A:HIS28 3.2 0.0 1.0
HB2 A:CYS26 3.2 0.0 1.0
HB2 A:CYS46 3.2 0.0 1.0
HB A:THR51 3.3 0.0 1.0
CB A:CYS46 3.3 0.0 1.0
CB A:CYS49 3.3 0.0 1.0
CB A:CYS26 3.4 0.0 1.0
HG3 A:GLU48 3.4 0.0 1.0
CB A:HIS28 3.4 0.0 1.0
HB3 A:CYS46 3.6 0.0 1.0
H A:THR51 3.8 0.0 1.0
HB3 A:CYS26 3.8 0.0 1.0
HG2 A:GLU48 3.8 0.0 1.0
OD1 A:ASN24 3.8 0.0 1.0
N A:CYS49 3.9 0.0 1.0
HB3 A:HIS28 3.9 0.0 1.0
CG A:GLU48 4.1 0.0 1.0
CA A:CYS49 4.1 0.0 1.0
NE2 A:HIS28 4.2 0.0 1.0
OG1 A:THR51 4.2 0.0 1.0
CD2 A:HIS28 4.2 0.0 1.0
CB A:THR51 4.2 0.0 1.0
HB2 A:CYS49 4.2 0.0 1.0
H A:GLU48 4.5 0.0 1.0
HD2 A:PRO47 4.5 0.0 1.0
C A:CYS49 4.5 0.0 1.0
CA A:CYS26 4.7 0.0 1.0
N A:THR51 4.7 0.0 1.0
CA A:CYS46 4.7 0.0 1.0
CD A:GLU48 4.7 0.0 1.0
CA A:HIS28 4.8 0.0 1.0
CG A:ASN24 4.8 0.0 1.0
HD22 A:ASN24 4.8 0.0 1.0
N A:HIS28 4.8 0.0 1.0
HA A:CYS46 4.8 0.0 1.0
HG23 A:THR51 4.8 0.0 1.0
H A:GLY50 4.9 0.0 1.0
N A:GLY50 4.9 0.0 1.0
C A:CYS26 4.9 0.0 1.0
H A:CYS26 4.9 0.0 1.0
H A:GLY27 4.9 0.0 1.0
H A:HIS28 4.9 0.0 1.0

Reference:

V.Gervais, D.Busso, E.Wasielewski, A.Poterszman, J.M.Egly, J.C.Thierry, B.Kieffer. Solution Structure of the N-Terminal Domain of the Human Tfiih MAT1 Subunit: New Insights Into the Ring Finger Family J.Biol.Chem. V. 276 7457 2001.
ISSN: ISSN 0021-9258
PubMed: 11056162
DOI: 10.1074/JBC.M007963200
Page generated: Wed Dec 16 02:49:49 2020

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