Zinc in PDB 1g25: Solution Structure of the N-Terminal Domain of the Human Tfiih MAT1 Subunit
Zinc Binding Sites:
The binding sites of Zinc atom in the Solution Structure of the N-Terminal Domain of the Human Tfiih MAT1 Subunit
(pdb code 1g25). This binding sites where shown within
5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the
Solution Structure of the N-Terminal Domain of the Human Tfiih MAT1 Subunit, PDB code: 1g25:
Jump to Zinc binding site number:
1;
2;
Zinc binding site 1 out
of 2 in 1g25
Go back to
Zinc Binding Sites List in 1g25
Zinc binding site 1 out
of 2 in the Solution Structure of the N-Terminal Domain of the Human Tfiih MAT1 Subunit
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 1 of Solution Structure of the N-Terminal Domain of the Human Tfiih MAT1 Subunit within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn66
b:0.0
occ:1.00
|
H
|
A:CYS9
|
2.2
|
0.0
|
1.0
|
SG
|
A:CYS6
|
2.3
|
0.0
|
1.0
|
SG
|
A:CYS31
|
2.3
|
0.0
|
1.0
|
SG
|
A:CYS34
|
2.3
|
0.0
|
1.0
|
SG
|
A:CYS9
|
2.3
|
0.0
|
1.0
|
HD2
|
A:PRO7
|
3.0
|
0.0
|
1.0
|
N
|
A:CYS9
|
3.1
|
0.0
|
1.0
|
HB3
|
A:ARG8
|
3.1
|
0.0
|
1.0
|
HB3
|
A:CYS31
|
3.1
|
0.0
|
1.0
|
HB2
|
A:CYS6
|
3.1
|
0.0
|
1.0
|
N
|
A:CYS34
|
3.2
|
0.0
|
1.0
|
H
|
A:CYS34
|
3.3
|
0.0
|
1.0
|
HA
|
A:CYS34
|
3.3
|
0.0
|
1.0
|
CB
|
A:CYS34
|
3.3
|
0.0
|
1.0
|
CB
|
A:CYS6
|
3.3
|
0.0
|
1.0
|
CB
|
A:CYS31
|
3.3
|
0.0
|
1.0
|
CB
|
A:CYS9
|
3.4
|
0.0
|
1.0
|
HB2
|
A:SER33
|
3.4
|
0.0
|
1.0
|
CA
|
A:CYS34
|
3.5
|
0.0
|
1.0
|
HB2
|
A:CYS34
|
3.6
|
0.0
|
1.0
|
C
|
A:SER33
|
3.6
|
0.0
|
1.0
|
CA
|
A:CYS9
|
3.7
|
0.0
|
1.0
|
HB2
|
A:CYS9
|
3.7
|
0.0
|
1.0
|
H
|
A:ARG8
|
3.8
|
0.0
|
1.0
|
HB3
|
A:SER33
|
3.8
|
0.0
|
1.0
|
HG1
|
A:THR12
|
3.9
|
0.0
|
1.0
|
CB
|
A:ARG8
|
3.9
|
0.0
|
1.0
|
HB3
|
A:CYS6
|
4.0
|
0.0
|
1.0
|
C
|
A:CYS9
|
4.0
|
0.0
|
1.0
|
CB
|
A:SER33
|
4.0
|
0.0
|
1.0
|
H
|
A:CYS31
|
4.0
|
0.0
|
1.0
|
CD
|
A:PRO7
|
4.0
|
0.0
|
1.0
|
HB2
|
A:ARG8
|
4.0
|
0.0
|
1.0
|
C
|
A:ARG8
|
4.1
|
0.0
|
1.0
|
HB2
|
A:CYS31
|
4.1
|
0.0
|
1.0
|
N
|
A:ARG8
|
4.1
|
0.0
|
1.0
|
O
|
A:SER33
|
4.1
|
0.0
|
1.0
|
O
|
A:CYS9
|
4.2
|
0.0
|
1.0
|
H
|
A:SER33
|
4.3
|
0.0
|
1.0
|
CA
|
A:SER33
|
4.3
|
0.0
|
1.0
|
HB3
|
A:CYS34
|
4.3
|
0.0
|
1.0
|
CA
|
A:ARG8
|
4.3
|
0.0
|
1.0
|
CA
|
A:CYS31
|
4.3
|
0.0
|
1.0
|
HB3
|
A:CYS9
|
4.4
|
0.0
|
1.0
|
N
|
A:CYS31
|
4.4
|
0.0
|
1.0
|
N
|
A:SER33
|
4.5
|
0.0
|
1.0
|
CA
|
A:CYS6
|
4.5
|
0.0
|
1.0
|
N
|
A:LYS10
|
4.5
|
0.0
|
1.0
|
N
|
A:PRO7
|
4.5
|
0.0
|
1.0
|
HD3
|
A:PRO7
|
4.5
|
0.0
|
1.0
|
HA
|
A:CYS6
|
4.6
|
0.0
|
1.0
|
C
|
A:CYS31
|
4.6
|
0.0
|
1.0
|
HG2
|
A:PRO7
|
4.6
|
0.0
|
1.0
|
OG1
|
A:THR12
|
4.7
|
0.0
|
1.0
|
H
|
A:LYS10
|
4.7
|
0.0
|
1.0
|
O
|
A:CYS31
|
4.7
|
0.0
|
1.0
|
HA
|
A:CYS9
|
4.7
|
0.0
|
1.0
|
C
|
A:CYS6
|
4.8
|
0.0
|
1.0
|
OE2
|
A:GLU32
|
4.8
|
0.0
|
1.0
|
C
|
A:PRO7
|
4.9
|
0.0
|
1.0
|
HA
|
A:LYS10
|
4.9
|
0.0
|
1.0
|
CG
|
A:PRO7
|
5.0
|
0.0
|
1.0
|
C
|
A:CYS34
|
5.0
|
0.0
|
1.0
|
|
Zinc binding site 2 out
of 2 in 1g25
Go back to
Zinc Binding Sites List in 1g25
Zinc binding site 2 out
of 2 in the Solution Structure of the N-Terminal Domain of the Human Tfiih MAT1 Subunit
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 2 of Solution Structure of the N-Terminal Domain of the Human Tfiih MAT1 Subunit within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn67
b:0.0
occ:1.00
|
ND1
|
A:HIS28
|
2.0
|
0.0
|
1.0
|
SG
|
A:CYS46
|
2.3
|
0.0
|
1.0
|
SG
|
A:CYS49
|
2.3
|
0.0
|
1.0
|
SG
|
A:CYS26
|
2.3
|
0.0
|
1.0
|
HB2
|
A:HIS28
|
2.9
|
0.0
|
1.0
|
CE1
|
A:HIS28
|
3.0
|
0.0
|
1.0
|
CG
|
A:HIS28
|
3.1
|
0.0
|
1.0
|
H
|
A:CYS49
|
3.1
|
0.0
|
1.0
|
HB3
|
A:CYS49
|
3.1
|
0.0
|
1.0
|
HE1
|
A:HIS28
|
3.2
|
0.0
|
1.0
|
HB2
|
A:CYS26
|
3.2
|
0.0
|
1.0
|
HB2
|
A:CYS46
|
3.2
|
0.0
|
1.0
|
HB
|
A:THR51
|
3.3
|
0.0
|
1.0
|
CB
|
A:CYS46
|
3.3
|
0.0
|
1.0
|
CB
|
A:CYS49
|
3.3
|
0.0
|
1.0
|
CB
|
A:CYS26
|
3.4
|
0.0
|
1.0
|
HG3
|
A:GLU48
|
3.4
|
0.0
|
1.0
|
CB
|
A:HIS28
|
3.4
|
0.0
|
1.0
|
HB3
|
A:CYS46
|
3.6
|
0.0
|
1.0
|
H
|
A:THR51
|
3.8
|
0.0
|
1.0
|
HB3
|
A:CYS26
|
3.8
|
0.0
|
1.0
|
HG2
|
A:GLU48
|
3.8
|
0.0
|
1.0
|
OD1
|
A:ASN24
|
3.8
|
0.0
|
1.0
|
N
|
A:CYS49
|
3.9
|
0.0
|
1.0
|
HB3
|
A:HIS28
|
3.9
|
0.0
|
1.0
|
CG
|
A:GLU48
|
4.1
|
0.0
|
1.0
|
CA
|
A:CYS49
|
4.1
|
0.0
|
1.0
|
NE2
|
A:HIS28
|
4.2
|
0.0
|
1.0
|
OG1
|
A:THR51
|
4.2
|
0.0
|
1.0
|
CD2
|
A:HIS28
|
4.2
|
0.0
|
1.0
|
CB
|
A:THR51
|
4.2
|
0.0
|
1.0
|
HB2
|
A:CYS49
|
4.2
|
0.0
|
1.0
|
H
|
A:GLU48
|
4.5
|
0.0
|
1.0
|
HD2
|
A:PRO47
|
4.5
|
0.0
|
1.0
|
C
|
A:CYS49
|
4.5
|
0.0
|
1.0
|
CA
|
A:CYS26
|
4.7
|
0.0
|
1.0
|
N
|
A:THR51
|
4.7
|
0.0
|
1.0
|
CA
|
A:CYS46
|
4.7
|
0.0
|
1.0
|
CD
|
A:GLU48
|
4.7
|
0.0
|
1.0
|
CA
|
A:HIS28
|
4.8
|
0.0
|
1.0
|
CG
|
A:ASN24
|
4.8
|
0.0
|
1.0
|
HD22
|
A:ASN24
|
4.8
|
0.0
|
1.0
|
N
|
A:HIS28
|
4.8
|
0.0
|
1.0
|
HA
|
A:CYS46
|
4.8
|
0.0
|
1.0
|
HG23
|
A:THR51
|
4.8
|
0.0
|
1.0
|
H
|
A:GLY50
|
4.9
|
0.0
|
1.0
|
N
|
A:GLY50
|
4.9
|
0.0
|
1.0
|
C
|
A:CYS26
|
4.9
|
0.0
|
1.0
|
H
|
A:CYS26
|
4.9
|
0.0
|
1.0
|
H
|
A:GLY27
|
4.9
|
0.0
|
1.0
|
H
|
A:HIS28
|
4.9
|
0.0
|
1.0
|
|
Reference:
V.Gervais,
D.Busso,
E.Wasielewski,
A.Poterszman,
J.M.Egly,
J.C.Thierry,
B.Kieffer.
Solution Structure of the N-Terminal Domain of the Human Tfiih MAT1 Subunit: New Insights Into the Ring Finger Family J.Biol.Chem. V. 276 7457 2001.
ISSN: ISSN 0021-9258
PubMed: 11056162
DOI: 10.1074/JBC.M007963200
Page generated: Sun Oct 13 01:14:42 2024
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